Salvelinus namaycush (lake trout): 120024877
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Entry
120024877 CDS
T07522
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04137
Mitophagy - animal
snh04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120024877
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
120024877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120024877
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
120024877
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120024877
Multi subunit type E3
ERAD complex
120024877
LMBR1L-GP78-UBAC2 complex
120024877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
G2BR
zf-RING_2
CUE
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_11
zf-RING_UBOX
zf-rbx1
zf-RING_16
zf-ANAPC11
zf-RING_5
zf-C3HC4_4
Prok-RING_4
zf_RING_Vps8
RING_XB3-XBAT31
FANCL_C
Motif
Other DBs
NCBI-GeneID:
120024877
NCBI-ProteinID:
XP_038825144
UniProt:
A0A8U0TQ65
LinkDB
All DBs
Position
Sna30:5955500..5969995
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AA seq
633 aa
AA seq
DB search
MPLLFLERFPWPSLQTYTALSVVLLAGSIFSAYTTVTEQGFGVPDMDEPPPPAPLEGDNR
GGLGLEHVTSNDVVGADTELATTVMWYLVTDSLFVWVLVNTACCSLMLIAKMIQYMVFGP
LRVSEKQHLKDKFWNFIFYKFIFIFGVLNVQMVEEVVMWCLWFSALVFLHLMVQLCKDRF
EYLSFSPTTSMNSHVRVLTLLVSLLLGCCGLAVVCGLLGAAHGMHTLSFMAAECLLVTVR
TGHVIMRYTIHLWDLNHPGTWESKGSYVYYTDFIMELSMLSLDLMHHIHMLLFGNIWLSM
ASLVIFMQLRYLFHEVQRRIRRHKNYLRVINNMEARFAVATAEELVANNDDCAICWDTMQ
TARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNISGDGGPARGQQQGAGLPLENNLGPG
GPAADARPHLNQHNHFFHFDGSRIASWLPSFSVEVMHTTNILAIAQQANNSQLNTMAHQI
QEMFPQVPYHLVLQDLQLTRSVEVTTDNILEGRIVVPFPALAAERSPVQVNPGPEGAGAS
GGVETAPSELNNLEVRGSRFSKSAEERQKMLLQRKDELLQQARRRYLRKSPEDEEDLPTL
EEDAPVSDVTMLRRRTMAAAAERRMQSQPDPAP
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgctattcctggagaggtttccctggcccagtctgcagacctacacagcgctg
agtgtggttctgctggctggaagcatcttcagcgcctacactactgtgactgaacagggg
tttggggttccagacatggacgagcctccaccacctgcacccttagaaggggataataga
ggcggcctaggcctagaacatgtgactagcaatgatgttgtgggtgcagatacagaattg
gcgaccactgttatgtggtacctggtcactgacagtctctttgtatgggtgttggtgaat
acagcttgctgttctctgatgttaattgctaagatgatccagtacatggtttttgggccc
ctccgagtcagtgagaagcagcaccttaaggacaagttctggaacttcatcttctataag
ttcatctttatcttcggggtgctgaacgttcagatggtggaagaggtggtcatgtggtgt
ctgtggttctctgccctggtcttcctccacctcatggtccagctgtgcaaggaccgcttt
gaatacctgtccttctcccccactacttctatgaacagccatgtgcgtgtccttacccta
ctggtgtccctgctgctgggctgctgtggtcttgctgtggtctgtggtctgctgggcgct
gcacatggcatgcacaccctctccttcatggctgccgagtgtctgctggtcactgtgcgg
actggacatgtcatcatgaggtacaccattcacctgtgggatctgaaccacccaggcacc
tgggagagtaagggctcctacgtctactacactgacttcatcatggagctgtctatgctg
tccctggaccttatgcaccacatccacatgctgctctttggtaatatctggctgtccatg
gccagtctggtgatcttcatgcagctgaggtatctgttccatgaggtgcagcgccgcatc
cgacgccacaagaactacctccgtgtcatcaacaacatggaggccaggtttgcagtggcc
acagccgaggaactggtagccaacaatgatgactgtgccatctgctgggacaccatgcag
acagcacgtaaactgccctgcggacacctcttccacaattcctgcctgcggtcgtggctg
gagcaggacacgtcgtgtccaacatgcaggatgtccctgaacatcagtggtgatggaggc
ccggccagaggccagcagcagggggctggcctcccactggagaacaacctgggccctggg
ggccccgctgcagacgccagaccacacctcaaccaacacaatcacttcttccactttgat
ggctcccgcatcgccagctggctgcctagtttctcagtagaggtgatgcacaccactaac
atcctggctatcgctcagcaggccaacaactctcagctcaacaccatggcccatcagatc
caggagatgtttcctcaggttccctaccacttggtgctgcaggacctgcagttgacccgc
tctgtggaggtcaccaccgacaacatcctggagggacgcatcgtggtgcccttccctgct
ctggcggctgagcgttcccccgtgcaggtgaacccaggcccagagggggcaggagccagt
gggggggtggagactgctcccagcgagctgaacaacctggaggtcagagggagccgtttc
tccaagtctgcagaggagagacagaagatgctgctgcagaggaaggatgagctgttgcaa
caggcacgcaggagatacttgagaaagagcccagaggacgaggaggacctgcccactctg
gaggaagacgcccctgtctcagacgtgaccatgctgagacgcaggaccatggcagcagct
gcagagagacgcatgcagagccaaccagaccctgctccctga
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