Salvelinus namaycush (lake trout): 120024907
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Entry
120024907 CDS
T07522
Symbol
wdr43
Name
(RefSeq) WD repeat-containing protein 43 isoform X1
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120024907 (wdr43)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120024907 (wdr43)
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120024907 (wdr43)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_CDC20-Fz
WD40
WD40_Prp19
Utp12
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_SPT8
Beta-prop_WDR41
Beta-prop_VPS8
Beta-prop_Aladin
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
WD40_2
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_ACSF4
Tricorn_2nd
Beta-prop_IP5PC_F
SGL
Motif
Other DBs
NCBI-GeneID:
120024907
NCBI-ProteinID:
XP_038825200
UniProt:
A0A8U0TR54
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Position
30:34526393..34556824
Genome browser
AA seq
636 aa
AA seq
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MAADGGSFSLGLPCVFSPKSRQYLALCAQDGRLRIWNTDIKTLNQEYVPSAHLSATCTCI
SWGPCRKAKEGPQRKKRKSDAGQVENQVDLLALGTAAGSVIIYSTVKGALHCTLDGGHSG
GVNCVQWHPEDCLLYSGSDDTRIVEWDLQTGKARCKWKADRASVTSLCVSPDGKLLLSAG
HTIKMWDLETKEVYRKFTGHSTAVTTLRFATTRPPDSNGLYFLSGAAQDRLLSVWQVRED
GKDKNSVVSFNLTDEPHHIDLLTSSSKDEAVRLAVVCKDGQLHLFEHLLNGPCKKPLSPL
CTVQMTGVEDSPVPVPLLAVALTPDNHSLLLAYGNHLQPVMERVEVNTAERHVCLTRDVR
TTLSLNMETTVSKVKTPVGNAKSKVLVPGLPGHQAPVKGALGSEKRKGTDAKEMSIEERL
GKIKMSPEKGVKGAPSLQTDNYAVLLVQGLESKDINILNKVFHTRKDNLIKKTVALLPLP
AVLPLVEEITKRMQGHPYTAVLMVRWLKAVLMQHTSYLASLPDLVFQLGVLYHVIESRVK
MFHKLSKLHGKLYLLMTQVATSGKEVKDVEHKAKLVYEEESSDEDNASGDEGLPDEDSDN
WEEDETMEDEAEEGVRMESKVNGDSDIEPGNESEEE
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgatggaggtagtttttcgttggggctaccctgtgttttttctccaaagtca
cgtcaataccttgctttatgtgctcaggatggcagacttcgtatttggaacacagatatt
aaaacacttaatcaagaatacgtgccttcagcacacttgagtgcaacttgtacctgcata
tcttggggaccatgccgaaaggccaaggagggccctcaacggaagaagaggaaatcggac
gcaggacaggtggagaatcaggtggacctgttggctctgggcacggctgcgggcagcgtt
atcatctacagcacagtgaagggagcactgcactgtacactggacggaggtcacagtggc
ggggtgaactgtgtgcagtggcaccctgaggactgcctgctgtacagtggctcagacgac
acgcgcatcgtagagtgggacctacaaacgggcaaggcgcgctgtaagtggaaagctgat
cgtgcctcagtgaccagtctgtgtgtgagtccggatggcaagctgctgctctcagcggga
cataccatcaagatgtgggacctcgagaccaaggaggtgtaccggaagttcacaggtcac
tccacagctgtgactaccctgcgcttcgccaccacgcgtcccccggatagtaacggcctc
tacttcctctccggcgcggcccaggacagactcctcagcgtgtggcaagtccgggaggac
ggcaaggacaagaactcggtggtgtccttcaacctgacggacgagcctcaccacatagac
ctcctcacctccagcagcaaggacgaggcggtgaggctagcggtggtatgtaaagacggc
cagcttcatctctttgagcatcttttgaacgggccctgtaagaagcccctgtccccgttg
tgtacagtgcagatgactggggtggaggacagccccgtccccgttcccctgttggccgtg
gccctcaccccagacaaccacagcctgctgctggcctacggcaaccacttgcagcctgtc
atggagagagtggaggtgaatacggcagagagacatgtttgcctgacccgtgatgtccgc
accaccctctccctcaacatggaaaccaccgtctccaaggtgaaaaccccagtaggtaac
gccaagagcaaagttctagtccctggacttcccggtcaccaagcaccggtcaaaggagcc
ctgggatccgagaagagaaagggcacagatgccaaagagatgtcaatagaggagcgactg
ggcaagattaagatgtcacctgagaagggtgtcaagggggccccttctttgcagacggac
aactatgcggtgctgctggtgcagggcctggagagcaaggacatcaacatcctcaataaa
gtgtttcacacccggaaggacaacttgataaagaaaacagttgcactgttaccactccct
gccgtcttgccattggtggaggagatcaccaagagaatgcaagggcatccatacacggca
gtgctgatggtgcgatggctcaaggctgttctcatgcagcacacctcctacttagcctct
ttgccagacctggtgtttcagctgggagtgctgtaccacgtgattgagagtagagtcaag
atgttccacaagctgtccaagctgcacggcaagctctatctgctcatgacacaggtggcg
acaagcggcaaagaagtcaaagacgtggaacacaaggccaagcttgtctatgaagaggag
tcctctgacgaagacaatgcttcaggtgacgaaggtcttccagatgaggattctgataac
tgggaggaggatgagaccatggaagacgaggcggaggaaggcgtgaggatggaatcaaaa
gtgaatggcgattccgacatagaaccggggaacgagagcgaggaggagtga
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