Salvelinus namaycush (lake trout): 120024918
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Entry
120024918 CDS
T07522
Name
(RefSeq) transmembrane channel-like protein 3 isoform X1
KO
K21988
transmembrane channel-like protein
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
120024918
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
snh02000
]
120024918
03037 Cilium and associated proteins [BR:
snh03037
]
120024918
Transporters [BR:
snh02000
]
Other transporters
Pores ion channels [TC:
1
]
120024918
Cilium and associated proteins [BR:
snh03037
]
Other cilia and associated proteins
Stereociliary proteins
120024918
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TMC
DUF6221
Motif
Other DBs
NCBI-GeneID:
120024918
NCBI-ProteinID:
XP_038825212
UniProt:
A0A8U0PI03
LinkDB
All DBs
Position
30:complement(3093691..3153711)
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AA seq
1143 aa
AA seq
DB search
MSGVSETAVVSRPSTTMKRHKSVRKNSRRIYSSYQDNQPGQSDEEGKEDEHADSNDPEQM
FQNIQFQKELIANIRTRAWPMRRKLKALKQAREIVLKYEGRLTRTRGYQAAGADLLKKVS
RLLYNVVVLFIPWEMRIKKIESHFGSGVASYFIFLRWLFGINIVLTVMTGAFIVIPELLA
GEPFGTTRSKTIPKEHLASAQDLDTIWMAKNSRLSLASASDENFTFCWRVFCAWDYLIGN
PEAAESKGAAIVNNIREAIVEEQEKKKDTSLAVLISLRILANILVLLSLAGSIYIIYFVV
DRSQKLELEKPELTLWEKNEVSVVVSLITMIAPSAFELVAQLEMYHPRTSLRFQLARVLV
LYLGNLYSLIIALLDKVNSMSMASAAAAAAASVISGNLSDSTAFMATISQPGETNLFTLV
SDISISENHNSTIATIAMVLDVNTSISTSKVTMATMYNHTGMFEQNKQKKPDECWETYVG
QEMLKLSIIDMIFTVASILLIDFIRGLVVRYLSDCCCWDLESKFPEYGEFKIAENVLHLI
YNQGMIWMGSFFSPCLPAFNVLKLIGLMYLRSWAVLTCNVPHQQVFRASRSNNFYLAMLL
FMLFLCMLPTIFAIVRYRPSQHCGPFSGQEKIYDIISETIANDFPLWFSKVMSYVTSPVV
ALPALLLLFMLIYYLQAIARSLKFTNNQLRMQLQTERTEDKKKVLQLASARLQAPEVPGG
DRKPDQQDGDITSRESSIRTPSPRPNGSVTNFQSPDRRGNGIRTITQSASRAETARATFA
AGASRSPTVSIIHKQRPENIPNRHPSYLGGPSGTCRSKSYHHVAYNPPTRYSSENIHSDP
LYRKTIRPMHSAEAAGIVTAQSYVGRRPYTMRYVIVNEHEARKKLLRSATRVPRHFRAED
PVGEIVELIPRNIKRYTPRAPHLHGHPHRSNPAQSHLSDEEQEEEAGGKRESRRGSFGQT
HRPRSLSDLHQPARFYIGERLETKLSMASKDSHTARGRYGGEAQKGDWEDMETRLHSLSQ
TSIRGAELPPPIRHTQSPARHPHSPSRLVHSPPQGPGRRLEPQVKPKTSRSKLEPSLTES
DSASLASSSDQQNSSTDQYIQVIHNKEKYLKSEARQGKLAKKKSKASIDLNVSGSKDLVC
SNV
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcgtgtctgagactgctgtggtcagtagaccctcgactaccatgaagcgacac
aagagtgtcaggaagaactccaggcggatttactcatcttatcaagacaaccagccaggc
caatcagatgaggagggcaaggaggatgagcatgcggacagcaacgacccagagcagatg
ttccagaacatccagtttcagaaggagctcatcgccaacatacgcacccgagcctggcct
atgagacgcaagctcaaagccctcaagcaggccagagagattgtcctgaagtacgagggg
aggctaacaaggaccagagggtaccaggctgctggggctgatctgctgaagaaggtctcc
aggctgctgtacaacgtcgtggttctgtttattccctgggagatgaggatcaagaaaata
gaaagtcactttgggtcaggggtggcctcctacttcatcttcctcagatggctgtttggt
atcaacatagtccttactgtcatgactggagcattcatagtcatacctgagctcctggcc
ggagagccgttcggaacaacccggagtaagaccattcccaaggagcacctggcctcagcc
caggatctggacacaatctggatggctaagaactcccgtctgagcctagccagtgcctct
gacgagaacttcaccttctgctggagagtgttctgtgcctgggactacctcatagggaac
cctgaggctgcagagagcaagggagccgctatcgtcaacaacatcagggaggccattgtt
gaggagcaggagaaaaagaaggatactagtctagcagtcctgatcagtctgcgtatccta
gccaacatcctggtccttctctctctggctggcagcatttatataatctactttgtggtg
gaccgctcccagaaactagagctggagaagccagagctaacactatgggagaagaatgag
gtgagtgtggtggtgtccctcatcaccatgattgccccgtctgcctttgagctggtggct
cagctggagatgtaccatcctaggacctccctccgcttccagctggccagagtcctggtg
ttatatctgggtaacctgtacagcctcatcattgcccttctggacaaggtcaacagtatg
agtatggcgtcagctgctgcagctgcggcggcctctgtgatttcggggaacttgtctgac
tccacggcattcatggcgaccatctcccagccgggggagacgaacctcttcaccctcgta
tccgacatctccatctctgaaaaccacaacagcaccatagcgaccattgccatggtgctg
gatgtcaacaccagcatcagcaccagcaaggtcaccatggcaaccatgtacaaccacact
gggatgtttgagcagaacaagcagaagaaaccggacgagtgctgggagacctacgttgga
caggagatgttgaagctgtctatcatcgatatgatcttcacggtggccagtatcctgttg
atagacttcatcagagggctggtggtcaggtacctgagtgactgctgctgttgggacctg
gagagcaagtttcctgagtatggggaattcaagatagctgagaatgtactccacctgata
tataaccaaggaatgatctggatgggttcgttcttctctccctgtctgcctgcctttaac
gtgttgaagctgataggcttgatgtacctgaggagttgggctgtgctcacctgtaacgtc
cctcaccaacaggtgttcagagcatccagatcaaataatttctacctggctatgctgttg
ttcatgctttttctgtgtatgctgcccaccatctttgccatagtgagatacagaccttcc
caacactgcgggccatttagcggtcaggagaagatttatgacatcatctcagagacgata
gccaatgacttcccgctgtggttcagtaaagtgatgagttacgtcaccagccctgttgta
gcgctgcccgctctgctgctgctgttcatgctgatctactaccttcaggccattgccaga
tcccttaaattcaccaacaaccagctgaggatgcagcttcagactgagagaacagaagac
aagaagaaggtattacagctggcttcagcgaggctacaggccccagaggtccccgggggg
gacaggaagcctgaccagcaggatggtgacatcaccagccgcgagtcgtccattcgcacg
ccgtcgccacgacccaacggcagtgtcacaaacttccagtcgcccgatcgtcgcggcaac
ggcatccgcaccatcacccagtcggcatcgagggccgagaccgctagggcgacatttgct
gctggggcgtctagaagtccaacagtgtccataattcacaagcaaaggccggagaacatc
cctaacagacacccttcctacctgggaggccctagcggtacctgcaggtccaagtcctac
caccatgtggcgtacaaccccccgacacgctactcctcagagaacatccactccgaccca
ctctacaggaagaccatcaggcccatgcactccgcagaggcagctgggatagtgaccgcc
cagagctatgtgggccgtcgcccctacaccatgcgctacgtcatcgtcaacgagcacgaa
gctaggaaaaagttgcttcgatcagccacacgcgtccctcgccacttccgagcggaggac
ccggtgggtgaaatcgtagagctgatcccgcggaatatcaagcggtatactccaagggcg
ccgcatctgcatgggcacccacataggtcgaatccggcgcagtcacacctgagtgatgaa
gagcaggaggaagaggcaggggggaagagggagtctaggagggggtcgttcgggcagact
caccggccccgctcactctccgacctccaccagccggctcgcttctacatcggagagcgc
ctggagaccaagctgtctatggcgtcaaaagacagccacactgctagggggcgctacggc
ggtgaagcccaaaaaggggactgggaggatatggagacgcgcttgcactccctctcccag
accagcatcagaggagcggagcttccaccaccaatcaggcacacacagtccccagccaga
cacccccactccccgagcagacttgtacactcacccccccagggccctggaagacgcctg
gagccacaggtcaagcccaagacatccaggtccaagctggagccttccctgactgagtcg
gactcggcctctctggcctccagtagcgaccagcagaacagcagcacagaccagtacatc
caggtcattcacaacaaggagaagtatctcaagtctgaggcaaggcaaggcaagctggct
aagaagaagtccaaagccagtatagatctcaatgtgtctgggtccaaagacctggtctgc
tccaacgtgtag
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integrated database retrieval system
