Salvelinus namaycush (lake trout): 120024937
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Entry
120024937 CDS
T07522
Name
(RefSeq) cadherin-5-like
KO
K06533
cadherin 5, type 2, VE-cadherin
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04514
Cell adhesion molecules
snh04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120024937
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
120024937
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120024937
04090 CD molecules [BR:
snh04090
]
120024937
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Major cadherins
120024937
CD molecules [BR:
snh04090
]
Proteins
120024937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_CELSR2_9th
Cadherin_2
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
120024937
NCBI-ProteinID:
XP_038825239
UniProt:
A0A8U0TRR9
LinkDB
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Position
Sna30:26123455..26135280
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AA seq
766 aa
AA seq
DB search
MMRQSAWRQMTGPDMWMGLFALAVTLGLTMAEHMDQRPALQTSPVLHRHKREWLWNNLYV
EEERPIDKQYYIGKLKSTKAGDRTRYVIKGDGANTIFKVDEKGDIYVTERLDREVKSIYH
LSAKLLDTSNNLVEEKVEEFVILVTDINDNDPVFTKSFNASIKERSKRGTKVIEVTATDA
DDPTTANGELAYTLLEGGDFFNIDSTTGIITTKYENLDRETQSSYVVVVQAQDLRGLKQG
GTATTSVTIAVSDINDNIATFTKSSYVFSVKEDMKRGQRIDTIVLEDRDEIQNKDPIFTI
ESPSDTFEMERSQIKDGNLMLKQGLDYETKSSYTFSVHVRENNLQSPADNKDNPVIKAQV
TIQVLDVDEQPEFSKSIYNFNVIEEMMVNNIGVVSARDPDKANKAIRYSIKDKDSPIGIN
PITGQLFTVRKLDRELVANHMFQVKAKEEPNGLESFVNVNILVIDINDNKPELSIEEIFV
CENDMAGTVIGTISATDKDENFPSFSFTLVKPNGNFSIIDNNDNTSNIVLKHGGFSLEDS
RDYVIEIGISDGGRPPMSSITSLPIKVCRCDNKRIHTQCKAAQLKMGVGVYTLIPILCIL
TILVIVILIAMRKRHQKDALVTLGKSELHEQLVTYDEEGGGEMDTNGYDVSILTSARNDS
SMSMRQGPSLYAMVKKPPTACKGDMAVMIEVKKDEADHDRDGIPYDTLHIYGYEGPESLA
GSLSSLDSSSTGSSLDYDFLNDWGPRFRTLAELYGVDGSEGSDSLY
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgatgagacagtctgcatggaggcagatgactgggccagatatgtggatgggtctcttt
gccttggccgtgaccctcggtctaaccatggctgaacatatggaccagaggccagcactc
caaaccagtccagttctccacaggcacaagagagagtggttgtggaacaacctttacgtg
gaggaggaaaggccaatcgacaaacaatactatattggaaagttaaagtcaactaaagct
ggtgacaggacacgctatgtcattaaaggagatggtgccaacacaatcttcaaagtggat
gaaaaaggagacatctacgtcactgaacgattggatcgagaggtgaaaagcatataccat
ctaagtgcaaagctgcttgataccagcaacaacttggtggaggagaaagtggaagagttt
gtgatcctggttaccgacatcaatgacaacgatccagtgtttactaaatcgttcaacgct
tctatcaaagagagatccaaaagaggaactaaagtgatagaagtcactgccactgatgca
gacgatccaacgacggcaaatggagaacttgcttacacattattagaggggggagacttc
ttcaatatagacagcacaacagggattatcaccaccaagtatgagaacctggaccgtgag
acccagagtagctatgtcgttgtggttcaagcccaggatctgagaggacttaaacaaggg
ggcaccgccaccacctctgtcaccatcgcagtcagcgacatcaatgataacatagccaca
tttaccaaaagttcctatgtatttagtgtgaaagaggacatgaagcggggacagagaata
gacaccatagtcctggaggacagagatgagatccagaataaagacccaatcttcaccata
gaatctccatcagacacctttgagatggagcgcagtcagatcaaagatggcaacctcatg
ctgaaacagggactggattatgaaaccaagagcagctacacgttcagtgtgcacgtgagg
gagaataacttgcagtcccctgcggataataaggacaatccagtgatcaaggcccaggtg
accatccaggtgctagacgttgatgagcagccagaattcagcaagagcatctacaacttt
aatgtgatagaggaaatgatggtcaataatattggagtcgtttcagccagagatcctgat
aaagccaacaaggccataaggtattccattaaggacaaagacagtcccattggtatcaac
cccataactggacaacttttcacagtgaggaagctggatcgggagcttgtagcgaatcac
atgttccaggttaaagctaaggaggaaccaaatggactggaatcttttgtgaacgtcaac
atactggtcattgatatcaatgacaacaaaccagagctgtccattgaagagatattcgtt
tgtgaaaatgatatggctggcacggtgattgggaccataagtgcgacagacaaagacgaa
aattttccctcattcagcttcacattggtgaagccgaatggcaacttttcaatcatcgat
aacaacgacaacacatctaacatagtcctgaaacatggaggcttcagcctggaggactcc
agggattatgtaatagagattgggatcagcgatggaggcaggccacccatgagcagcatc
acctctctgcctatcaaagtgtgcaggtgtgacaacaagaggatccacacccagtgcaaa
gcagcccaactcaaaatgggtgtgggtgtctacaccctgattcctatactgtgcatcctg
actattctggtcatagtgatcctgatcgctatgagaaagcgtcaccaaaaggacgccctg
gtcactctgggtaagagtgagctccacgagcagctagtgacatacgacgaggagggtggt
ggggagatggacaccaacggctacgacgtgtccatcctgacctcagctcggaatgacagc
agcatgagcatgaggcagggccccagcctttacgccatggtgaagaaaccaccaactgcg
tgcaagggagacatggctgtgatgatcgaggtgaagaaagacgaagctgaccatgacagg
gatgggattccctacgataccctgcacatctacggctacgaggggccagagtccctggct
ggtagcctcagttccctggatagttcctccacgggctctagccttgactatgacttctta
aacgactggggccctcgcttcagaaccctggctgagctctacggggtagatgggtctgag
ggaagtgactccctgtattga
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