Salvelinus namaycush (lake trout): 120025289
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Entry
120025289 CDS
T07522
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120025289
04091 Lectins [BR:
snh04091
]
120025289
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
120025289
Lectins [BR:
snh04091
]
C-Type lectins
Others
120025289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Ion_trans
GPS
Fae
Motif
Other DBs
NCBI-GeneID:
120025289
NCBI-ProteinID:
XP_038825705
UniProt:
A0A8U0PIM2
LinkDB
All DBs
Position
Sna30:complement(17174696..17184521)
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AA seq
1643 aa
AA seq
DB search
MLIFLPVGEISSNYMLSVDVTVTELNTKTRGSTTITTEVRPAKSGTPVQELQSAVADTVA
NLVQQGMLSGETLGQMFKSVSDILNKGSSEEKNNRMKLREQMLMNITEALENSSSSTPQK
VQLTARAVAGLTKRGDELSPDAQLEASFLVANLSSSLLSMNTSEHGGEEEMVQAATPIVE
AASNILDVSSNREVSDLLLKGMDNVQSALLNWKKVDEAPVIVNSSQITVFVNRVSTETIQ
MQSISNPISSSASFSFPPLGADILSPYEPVDVRMLSLKKNPFSWSEENNITGTVGSVSLT
RGDGSVIPIENLSEEIEIFLPRPEGGQANSTILYLGNYSTLMVDVPSPDVTLVLKIKPSK
DITFQLFLGYKDYPNDKQYIAKTQMPHQSNTPEEKYTWVLGPNDLTGKVGVHYLVVRPIV
EAGVKSVNATVTVTSIAAQCKYWNETLSTWSEDGCRVGPLTTLLATQCLCTHLTFFGNSF
FVMPNLVDVSRTAELFGTFAQNPVVVCFIGSIFVAYVLVVIWARRKDIQDTAKVKVTLLE
DNDPLAEYRYMLNISTGHRRGASTSSQVTVTLLGMEGESEPHHLTDPDKPVFERGAVDTF
LLTTPFSLGELQSIRLWHDNSGGHPAWYINKVMVQDVETGQKWHFLCNSWLAIDMSECTL
DKVFPVATEMDLKKFSNMFFMRTAKDFRDGHIWFSVISRPPTSTFTCVQRVSCCFSLLLC
TMLTSIMFWGIPTDPSEQTMDLGHIEFTWQQLMIGVQSSIIMFPINLLIVSIFRNTRPRE
TKPGKHKAEVSKQGKTGRVTHSQPSFPQRDRELTPDTVIKDIKKIAQSLSKAMKSPIPRL
ELEMKPGPQTDINTLLSLVEDIIRQQNRAGGEFYTDASKKEGSLILSLGVTNLQESSLCG
SPEKTGDGRQKRSTNSQYLYRQLRHVEKELSLLGPSRFPNPDNYCRAVQQVQGMKGLLES
SSLGGDELDQSPGQAESSDGDRGSKKCCQDGLPWWFVFIGWILVVATSGVSGYFTMMYGL
TYGKDRSISWLISMVVSFFQSLLIIQPLKVLGLAAFFALVLKKVDQDEYGDPKIEGALRN
PDDPDVVWAVRRDSTCSFYQPPPPTDIERMRNNMIKEQKVFALIKEILTYMGFMWMLLLV
AYGQRDPNAYFLIQHIRQSFSQGISDSMSHGNVFTWANTSLLSNLFGEYPGFITDGNSKL
VGNARLRQVRVQKNSCRIARSMRQAVPDCHAPYSWEVEDMGSYGPGWNRSASENNSKTLR
SPWQYQTQARLRAQPIWGSVVLYRGGGFVVDLGPDSQNASSTLQYLFDNTWLDLFTRAVF
VEFTVYNANVNLFCIVTLMLETTAVGAFQFCSELQSVRLYQSTGGLHIFVMASEVIYFLF
IFYYMYVQGKLMKQQKWAYFKTKWNLLELTIILLSWSALSVFIKRSLLGNRDMEYYHNHK
DQFASFHETATADAVLGYLIAFLVLLATVKLWHLMRFNPKLHMITATLQRAWTDISGFLV
VITIMFLAYSIVSNLMYGWKLYSYRTLLDSALTMVSLQLGIFNYDEVLDYNPVLGAFLIG
SCIIFMTFVVLNLFISVILVAFTQEQMHHKPSEEEEIVDLMLMKLCSLFGIKYKKEDKEE
SNSPKVNANNASVTKKEPSTISS
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcttcctacctgttggggagataagcagcaactacatgctgtcggtagatgtg
actgttacagaattgaacacaaagacacgtggaagtaccacaatcaccactgaggtgcgg
ccagccaagtccggtactccagtgcaggagctccaatctgcagtggcggacacagtggct
aatctagtgcagcaggggatgctctctggagagacccttggacagatgttcaagtctgtg
tcggacatactgaataaaggctccagtgaggaaaagaataacaggatgaagctgcgagaa
cagatgctgatgaatataactgaagcactggagaacagctccagcagcactcctcagaaa
gtgcagctgacggccagagctgtggcaggactcaccaagaggggtgatgagcttagtccc
gatgctcagcttgaagctagcttcctggtggcaaacctcagctcttccctcctctccatg
aacaccagtgagcatggtggagaagaggagatggtgcaggcagctacaccaattgtagag
gcagccagcaatatcctggatgtttcctcaaacagagaagtctctgatttacttctcaag
ggcatggacaatgtgcagagtgcactgttgaattggaagaaggttgatgaagctcctgtg
attgtcaacagctctcagatcactgtgtttgtgaacagagtgtcaacagaaactattcag
atgcagtctataagcaacccaataagctcctctgcaagcttttccttccctcccctgggt
gctgatatcctttctccatatgaaccagtggatgtgcgaatgctgagtttgaagaagaac
ccattttcatggagcgaggagaacaacattaccggcactgtggggtctgtctccctgacc
agaggagatggttctgtcatccccatagagaacctatctgaggagattgagatcttcttg
ccaaggcctgaaggagggcaagcaaacagcacaatactgtacttgggaaactatagcaca
ttgatggtcgacgtcccttcacctgatgtaacactggtgctgaagataaagccatcgaag
gacataacctttcaactgttcctggggtataaagactacccaaatgataaacaatacata
gccaagactcagatgcctcaccagagcaacacgccagaggagaaatacacctgggtcctg
ggtcccaatgatttgacaggaaaagttggggtgcattaccttgttgtgaggcccattgtg
gaagcaggggttaaatccgtcaatgccactgtgactgtcacctccattgctgctcagtgc
aaatattggaatgaaaccttatccacctggagtgaagatggctgcagggttggtccttta
accacgctattggccacccagtgcttatgtacgcacttgaccttcttcgggaactctttc
ttcgtcatgcccaacctcgtagacgtgtcacgtacggctgagctctttggcaccttcgca
caaaatcctgtggtggtgtgctttattggttccatctttgttgcttacgtattggtggtc
atatgggcacgcaggaaggacatccaggacacagccaaggtgaaggtgacattgttggaa
gataatgaccccttggctgaataccgttacatgctgaatatcagcactgggcatcggcgt
ggtgcttccacctcctctcaggttactgtgactctgctgggcatggagggagagagtgag
ccacaccacctcactgaccctgacaagcctgtgtttgagaggggtgcagtggatacattt
ctgttgaccacgcccttctctctgggggagctgcagagcatcaggctgtggcacgacaac
tcaggggggcacccagcctggtacataaacaaagttatggtgcaagatgtagagacagga
cagaagtggcacttcctgtgtaactcatggctggccatagatatgagtgagtgcactctg
gataaagttttccctgtagccacggagatggatttgaagaaattcagtaatatgttcttc
atgaggacggcaaaagatttccgtgatggccacatctggttttctgtgatcagccggcct
ccaacgagcaccttcacatgtgtccagcgagtctcctgctgtttctctctgctgctctgc
accatgctgaccagtatcatgttctggggcatccctaccgacccctctgagcagaccatg
gacctgggtcatattgagttcacctggcagcagctgatgattggagttcagagttcaatc
ataatgtttccaattaatctcctcattgtgagtatcttcagaaacacccgcccccgagag
acgaagcctggaaagcacaaggcagaggtgtccaagcaggggaagactggcagagtgact
cactcacagccctcgttcccacagagggacagagaactcacaccagacacagtcatcaag
gacataaagaagattgctcagtcactctccaaggctatgaagagccccattccacgcctg
gagttagagatgaagcctggaccacagactgatatcaacactctgctctctctggtggag
gacataatccggcagcagaaccgagccggtggagagttctacactgatgcctccaagaaa
gagggatcgctcattctctcactaggggtaaccaatctgcaagagagcagcctgtgtggg
agccctgagaagactggggatgggagacagaaaaggagcaccaacagccagtatctgtac
aggcagctacgccatgtagagaaggagctgagcctactgggaccttctcgcttccccaac
ccagacaactactgccgggcagtgcagcaggtccagggcatgaagggactgctagagtct
tccagcctgggaggggacgagctggatcaaagcccaggccaagctgagagtagtgatggg
gacaggggcagtaaaaagtgctgtcaagacgggcttccctggtggtttgtgtttatcggc
tggatactggtggtagccaccagcggagtatcaggatacttcaccatgatgtatgggttg
acctatgggaaggaccgttctataagctggctcatctccatggttgtttctttctttcag
agcctcctaatcattcagccgctgaaagtgctaggtttagcagccttctttgctctcgtt
ctgaagaaagttgatcaggacgaatatggggatccaaaaattgagggggcactcagaaac
ccagatgaccctgatgtagtctgggctgtcaggagggatagcacatgcagcttctaccag
cccccgccacccacagacatcgagaggatgaggaacaacatgatcaaggagcagaaggtt
ttcgccctcatcaaagagattctcacctacatggggttcatgtggatgttgctcctggtg
gcgtatggtcagcgggaccctaacgcttacttcctgattcagcacattcggcagagcttc
agccaagggatctcagacagcatgagccacggaaatgtgttcacctgggcaaatacctct
ctcctcagcaacctcttcggagagtacccaggttttatcacagatgggaactccaaactg
gttggtaatgcccgtcttcgccaggtgagggtgcagaagaactcctgccgcatcgcccgc
tccatgcgccaggctgtacctgactgccatgctccatactcatgggaggtggaggacatg
ggctcctatgggccaggctggaaccgctctgcaagtgaaaacaactcaaagaccctccgc
agcccctggcagtaccaaacccaggcccgactcagagcccaacccatctggggcagtgtg
gttctctacaggggaggggggtttgtggtggacctgggccctgactcacagaacgctagc
agtacccttcagtatctgtttgacaacacctggcttgatttgttcacccgagcagtcttt
gtagagttcacagtgtacaatgccaatgtcaacctcttctgcattgtcacactcatgctg
gagaccacagctgtaggagcgttccagttttgcagtgagctgcagagtgtccgactatac
cagtccaccggtggactccacatctttgttatggcctctgaggtcatctatttcctcttt
atcttctactacatgtatgttcagggaaagctgatgaagcagcagaagtgggcttacttc
aaaacaaagtggaacctgctggagctcaccatcatcctcctgagctggagcgcactgtct
gtcttcattaagaggagcctgttagggaaccgggacatggagtactaccacaaccataaa
gaccagtttgccagtttccatgagacagccacagcagatgcagtgctggggtatctgatc
gcattcctggtgctactggctacagtcaaactgtggcacctgatgaggttcaaccccaag
ctacacatgatcacagccacactgcaacgtgcctggactgacatatcaggcttccttgtg
gtcatcaccattatgttcctggcctattctattgtttctaatctgatgtatggctggaag
ctgtactcatataggactctcctggattctgctctgaccatggtcagcttgcaactgggc
atcttcaactatgacgaggttcttgattacaacccggtgcttggtgcgttcctcatcggc
tcctgcattatattcatgacctttgtggttctgaacctgttcatctcagtcatcctggtg
gcgttcactcaagagcaaatgcatcacaagccctcagaggaggaggagatagtggatctg
atgctgatgaagctctgcagcttgtttgggatcaaatataagaaagaagataaagaagaa
agtaacagtcccaaggtgaatgccaacaatgcctctgttactaagaaagaaccctccact
atatcctcatag
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integrated database retrieval system
