Salvelinus namaycush (lake trout): 120025361
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Entry
120025361 CDS
T07522
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120025361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120025361
03036 Chromosome and associated proteins [BR:
snh03036
]
120025361
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120025361
Coactivators
SAGA/TFTC/STAGA complex
120025361
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
120025361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
120025361
NCBI-ProteinID:
XP_038825831
UniProt:
A0A8U0PJV7
LinkDB
All DBs
Position
Sna30:10660430..10782958
Genome browser
AA seq
1011 aa
AA seq
DB search
MAGTSDPLEDMLFSEVDEKAVSDLVGSLESQLVGRSNPANTQSENRGAGSTVTANHHLGK
TLPAQVGNVTTLVQQQQQQQGQHKAGMHQEMNSNEISSEKTVTSSSLSSIPSFEEASTTS
GTGVNATKSGLQSHGTSSITTVPASGGVATSPLVNSSSIISSTTTSRGSALASGQTSTDS
VDHPRKRITASLRSALAGIQSLNGTGGAATSRNNPPAAGTDALINNVGTVSSSASAANSS
RTVDVTSCVNTTNFTLSSSSISSTQSAIPLDKGTPTIALQRLPSHIVASIAHNGNGTTVS
ALVKQGAIGPITSAAASQVNHKKEGSEAKSDAPVQSKIVMSSPLGVVNSVISSVSSPSAV
FNLAATSTASLVMAKPAVNVVGQTVTTTVGMVRPASPSVATATQPLLQLGVQAAQRIVAP
QLIVRPPQQQQTTIQLPPGFTIPPGMVLVRTEMGQLVMVPQQALAQAQAQAQAQAQNNIS
PRTATPTAGATFRATTPQKGPMALAVAVTTPQQAPVVMAPQAQVQAGAQAASQPALPQQT
SALVAPGASVVSQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKSLVQDLLDAKIEP
EEFTNRLQSELKSSPQPYLVPFLKKSLPALRLSLLNIQHSLIQPLPQAKATPTTGTSSAI
MAGPAVRGRLPNSVSTTGASVGAQGHTAALGIKQAGTAGCQVRMPMMITPLRTQGTVSKG
ATFQAGKSPVGFAVKGSGNQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARILATN
SELVGTHIRSCKDEAFLHPGLLHRRILETAKKFGVSEVPMEAVNFISHATQSRLRTVLEK
VSSIAQHRMDGGKDEEGYEQSADVRSQLKFFEQLERIEKQRKDEQEREILLKAAKSRSRQ
EDPEQARLKQKAKEMQQQEIALVRQRDANLTALAAIGPRKKRKMDSPGATPSGTEVSGSS
VGSPGAASSPSTSSQRQRQRITRVNLRDFIFYMEQEKETAHSLLLYRALLK
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcacctccgacccactggaagatatgctattttctgaggtggatgaaaaagct
gtgagcgatttagtgggctctttggagtcacaacttgttggacgaagcaaccctgcaaat
actcagtctgaaaacagaggtgctgggtctacagtcactgcaaaccatcacttagggaaa
acgctaccagcccaagtgggtaacgttactacactagtacagcagcagcaacaacaacaa
ggacaacataaagctgggatgcaccaggagatgaactctaacgaaattagctcagagaaa
actgttacatcttcttcgctgagttctattccgtcctttgaggaagcttccaccacttca
gggaccggggtaaacgctaccaagagcggtttgcaatcgcatggaacatcatctatcaca
acagtacctgcatctggtggtgtagcaacttctccgcttgtcaacagcagcagcatcatc
agcagcaccaccaccagccgaggttccgctctggcttcaggtcagacatcaacagacagt
gtcgatcatccaagaaaacgcataactgcatcgttacggagtgcattggcgggaatacag
agtttgaacggtaccggaggagcggcaacgtcaaggaataatccccctgcggcgggaact
gatgcgttgattaataacgttggcactgtgtctagcagtgcaagtgcagcaaactcaagt
cggaccgttgacgttacatcttgtgtaaatacgacgaatttcactttatctagctccagc
atttcctcaactcaatcagcgattcccctggataaggggactcctactattgctttgcaa
agactaccaagtcacattgtagcgagcatcgcacataatggaaatggcactaccgtctcg
gccttggttaaacaaggcgcgataggaccgatcacatctgcagcagcttcgcaagtgaac
cacaaaaaagagggttctgaagcgaagtcggacgctcccgtgcagtccaaaatagtaatg
tccagtcctttaggtgttgtcaattccgtaataagctctgtttcctctccctctgctgtt
ttcaacctagcagcgacttctactgcaagtcttgtcatggcaaagcctgctgtcaatgtt
gttggacaaactgtcactacaacggttggaatggtaaggccagcgtcaccgtctgtggcc
acagctacacagcctctgcttcaactgggagtccaagcagctcaaaggattgttgccccc
cagctgattgtcagacccccccaacaacaacagacgaccattcaactgccacctgggttt
accatcccaccgggaatggtgttggtgcgcactgagatgggtcagctggtgatggtccca
cagcaggcccttgcccaggcacaggcccaagcccaggcccaggcccagaacaacatctcc
cccagaactgccacacccactgcaggggccaccttcagagcaactaccccacagaagggc
cccatggcgctggctgtggcagtgacgactccccaacaggcccccgtggtgatggccccc
caggcccaggtccaggctggggcccaggctgcctcgcagccagccctgccccagcagacc
agcgcccttgtagccccaggagcctctgtagtctcccaggagatgcaggagaatgtgaag
aagtgtaagaacttcttggccaccctgataaagctggcttcccacaactctccgtcacct
gagacctccaaaaatgtcaagtcactggtccaggatctactggatgctaagattgagcct
gaggagttcaccaacagactgcagtcagagctcaagtcgtctcctcagccctacctggtc
cccttcctcaagaaaagcctcccggccctgcggctgtctctgctcaacattcagcattcc
ctgatccagcctctgccgcaggccaaagccacccccaccacaggcaccagctctgccatc
atggccggcccagctgtccgcggccgcctccccaacagcgtcagcaccacgggggccagt
gtcggggcccagggacacacagctgccctgggtatcaagcaagcgggcaccgctggttgc
caggtcaggatgcccatgatgatcacaccattaagaacacaaggcactgtcagcaaggga
gccacgttccaagcaggcaaaagtcctgtgggttttgccgttaagggctctggaaatcag
aaaaacaagctgaacgatcccggaggcggttctttcagggatgatgatgacattaacgat
gtggcgtccatggcgggggtgaacctgaatgaagagagcgctcgtatcctggccaccaac
tctgagctggtgggaacacacatccgctcctgtaaagatgaggccttccttcacccgggc
ctgttacacagacgcatcctggagacagctaagaagtttggcgtgtcagaggttcctatg
gaggctgtgaacttcatctcccacgctacccagtcccgactccgcactgtgctggagaag
gtctcctccatcgcacagcacaggatggacggcggtaaagatgaggaggggtatgagcag
tcagcagacgtgcggtcgcagctaaagttctttgagcagctggagaggatagagaagcag
aggaaggatgaacaggagagagagatcctactcaaagcagctaaaagtcgctccaggcaa
gaggacccagagcaggctcggctgaaacaaaaagctaaggagatgcagcaacaggagatt
gccctggtgaggcaacgagacgcaaacctgaccgcgctagctgccatcggacctcggaag
aaacgcaagatggactcgccaggggccacgccgtcaggtaccgaggtatcaggcagctca
gtggggtcgccgggtgccgcctcctccccctccacgtcgtcacagcggcaacgtcaacgc
atcacccgcgtcaacctcagggacttcatcttctacatggagcaggagaaagagacagcc
cactcacttctgctctaccgggctctgctcaagtag
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