Salvelinus namaycush (lake trout): 120025386
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Entry
120025386 CDS
T07522
Name
(RefSeq) transcriptional repressor CTCF-like
KO
K23195
transcriptional repressor CTCF
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120025386
03036 Chromosome and associated proteins [BR:
snh03036
]
120025386
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120025386
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120025386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451
zf-C2H2_7th_ZNF462
Zf-C2H2_ZNF451_C
zf-met
zf-C2H2_6
zf-C2HE
zf-C2H2_15
Stm1_N
Motif
Other DBs
NCBI-GeneID:
120025386
NCBI-ProteinID:
XP_038825864
UniProt:
A0A8U0TQV4
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All DBs
Position
Sna30:complement(14926778..14936761)
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AA seq
770 aa
AA seq
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MEGEVVSFETAQVEGLQDSGEGAELLQTAEAALMEGGVAPQVVTGNVEMMVMDTLDSTLD
PALLQMKTEVLEGGGTVTVTGGDEGQIITLQVVNMEGNMEQTSAALGLGQLQLVQVPVTT
ATVEELQASFVDASAGNTEAEPVICHTLPLPEGFQVVKVGANGEVETVEQEELQAAQDEL
QVTHGEEEEEEAEPQVEDQTWSKDPDYQPTAGIRKGKKGKKSRLRYGEGERDMDVSVYDF
EEEQQEGMLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSH
TDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCQDCDMAFVTSGELVRHRRYKHTFE
KPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYE
CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSFMEMGRK
CRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYCCRQERHMIMHRRTHTGEKPYACSQC
EKTFRQKQLLDMHFKRYHDPNFIPTAFVCSKCAKTFTRRNTMLRHAENCNGENTGDENGT
PPKKGRRGRKRKMRSRRDDDDDETEPELDDIEEEEEEEELLAEIEVEQAPPVVPVPAPVG
PPAKRKRGRPPKAKPAPTAAIIRVEDETTGEVDDIIVKKEMKAEQASQEEEAVEDEVPAV
EVEHAEGEPANQVEESFQGEEVVQEVALSVTEAPPNGDLTPEMILSMMDR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgaagtcgtttcctttgagaccgctcaggtcgagggtctccaggacagtggg
gagggagcggagctgctccagactgcagaggctgccctgatggaagggggtgtggcaccc
caagtggtgacaggaaatgttgaaatgatggtgatggacaccctggactcaacccttgac
cctgccctgctacagatgaagactgaggtcctcgaagggggcggcacagtgacggtcacc
gggggagacgagggacagatcatcaccctgcaggtggtgaacatggagggcaacatggag
cagacgagtgcagcgctggggcttggacagctgcagctggtgcaggttcctgtcactaca
gccaccgtggaagaactgcaggccagctttgttgacgcctcagcaggcaatactgaggca
gagccagtgatctgccacaccctccctctgcccgagggcttccaggtggtgaaggttggg
gcgaatggagaggtggagacagttgagcaggaagaactgcaggcagcccaggatgagctc
caggtgacccatggagaggaggaggaggaggaagctgagccccaagtagaggaccagacc
tggtccaaagacccagattaccagccaactgctggcatccgcaagggaaagaagggcaag
aagagccgcctgcgttacggggagggggaacgagacatggacgtgtctgtatacgacttt
gaggaggaacagcaggaggggatgctctctgaggtcaacgctgagaaggttgtgggcaac
atgaagccgcccaaacccaccaagataaaaaagaaaggtgtgaagaagacgttccagtgt
gagctgtgtagctacacctgcccccggcgctctaacctggaccgccacatgaagagccac
acagatgagaggccacacaaatgccatctgtgtgggagggccttcagaacggtcacactg
ctgaggaaccacctcaacacacacacaggtactcgtcctcataaatgccaagattgtgac
atggcatttgtgaccagtggagaactggtgcgtcatcgtcgctacaaacacacattcgag
aaacccttcaagtgctccatgtgtgactacgctagtgttgaggtgagtaagctgaagaga
cacatccgctcccatacaggcgagaggcccttccagtgcagtctgtgcagctacgccagc
cgagacacttacaaactgaagagacacatgaggacacactcaggtgagaagccatatgag
tgctacatctgccatgctcgtttcacgcagagtggcaccatgaagatgcacatcctgcag
aagcacacagagaatgtggccaaattccactgcccccactgtgacacagtcatcgcccgc
aagagcgacctgggtgtgcacttgcggaagcagcattcgttcatggagatgggcaggaag
tgtcgttactgtgacgctgtgttccacgagcgttacgcactcatccagcaccagaaatcc
cacaagaacgagaagcgcttcaagtgcgaccagtgtgactattgctgcagacaggagcgt
cacatgatcatgcacagacgcacacacacgggggagaagccttacgcatgcagccaatgt
gaaaaaactttccggcagaagcagctgctggacatgcacttcaaacgctaccatgacccc
aatttcatccccactgccttcgtctgcagcaagtgtgccaagaccttcactcgcaggaac
accatgctgcgtcacgcggagaactgtaacggagagaacaccggcgacgagaacggaacc
ccgcccaagaaaggccgccgcggcagaaagaggaagatgcgctccagacgggatgacgac
gatgacgaaaccgagcctgagctggatgacattgaggaagaggaggaggaggaggagctg
ctagctgagattgaggtggagcaggcaccaccggttgtccctgtccctgcccctgttggc
ccgccagccaagaggaaacgtggaagacctcccaaggccaaacctgccccaacggcggca
atcatccgtgtggaggatgagacgacaggcgaggtggatgacataatcgtgaagaaagag
atgaaggccgagcaggcgagccaggaggaagaagctgttgaggatgaggtgccagcagta
gaggtggagcatgctgaaggagagcctgccaatcaggtagaagagtcattccagggggag
gaggtggtgcaggaagtggcactgtctgtcacagaggctccgcccaacggtgacctcact
cctgagatgattctcagtatgatggaccggtga
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