Salvelinus namaycush (lake trout): 120025488
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Entry
120025488 CDS
T07522
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120025488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120025488
03041 Spliceosome [BR:
snh03041
]
120025488
03009 Ribosome biogenesis [BR:
snh03009
]
120025488
03016 Transfer RNA biogenesis [BR:
snh03016
]
120025488
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120025488
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120025488
Spliceosome [BR:
snh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120025488
Complex C
U4/U6.U5 tri-SnRNP related factors
120025488
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
Helicases
120025488
Transfer RNA biogenesis [BR:
snh03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120025488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
120025488
NCBI-ProteinID:
XP_038825977
UniProt:
A0A8U0PJG0
LinkDB
All DBs
Position
Sna31:complement(42116961..42170810)
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTTSTKKKLAVPEKGKSTSKNGKGGKDEFYAAKSKREADNNGTD
EVVFGKRSKLETLSTEEINLADCMPKVRVEPVETVEGCNHEVALPANEEYAQLKPRVGKA
AKEYPFVLDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDIGDSGGGSGGGKWDPKGRKG
GTRGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNN
AIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTNARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDDKMSPA
IGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMA
KLEEMYNAIEIPNEESVVTYYKIRQQLAKLSKEIEEFIHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFSKKSNVKAITGDADPLYVVEVLVHCSKESVKKTATEAAKPAAAGEKGEM
QVVPVMLHLLTSISSVRLCSPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPGLKKVIQKVEAFEHRMYSHPMHSDPSLEAVYSLCERKALIAGDIKGAKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLSAEQVT
ALLSVFVFQENVTEMPKLTEQLAGPLRQMQECAKRVAKVSAEAKLEVDEDTYLDKFKPHL
MDVVYTWANGATFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcctttggtgacgatttgttcagcgtgtttgatgaagaacaaacaacttca
actaaaaagaaactagcggtacctgaaaaggggaaatcgaccagtaaaaatggcaaagga
ggaaaggatgagttctatgcagccaagagtaagcgggaagcagacaacaatgggacagat
gaggtggtgtttgggaagaggtccaagctggagactctttctacagaggagatcaatctt
gccgactgcatgcccaaggtgagggtggagcccgttgagacagtggaaggatgcaaccac
gaggtggccctaccagccaatgaggagtacgcacagcttaagcctcgtgtggggaaagca
gccaaggagtacccctttgttctggatcccttccaacgtgaggccattctgtgtatcgat
aacaaccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagctctgagggagaagcagagggtcatcttcaccagccccatcaaa
gccctgagtaaccagaagtacagagagatgtacgaagagttccaggatgttggcctgatg
accggtgatgtcaccatcaaccccaccgcctcctgcctcatcatgactaccgaaatcctg
aggagcatgttgtaccgagggtcagaggtcatgagagaggtggcctgggtcatctttgat
gagatccattacatgagagatgccgagcgtggcgtggtgtgggaggagaccatcatcctg
ctccctgacaacgtccactatgtcttcctgtccgccaccatccccaacgccaagcagttc
gctgaatggatctgccacctccacaaacagccctgtcacgtggtgtacactgacttccgg
cccacccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgtggtg
gatgagaacggagagttcagggaggacaacttcaacacggccatgcaggtgctgagagac
attggtgactctggaggtggcagcggagggggcaaatgggaccccaaggggcgcaaagga
gggacacgagggccgtccaacgtgtttaagattgttaaaatgatcatggagcggaacttc
cagccggtcatcatctttagcttcagtaagaaggagtgtgaggcctatgccctgcaggtg
tccaagctcgacttcaacacagatgaggagaagaagctggtggaggaggtgttcaacaat
gccatagactgtctgtcagacgaggacaagaagctccctcaggtggagcacgtcctgcct
ctattgaagagaggtatagggattcatcatggaggactgctccccatcctaaaggaaacc
atcgagatcctgttctctgaggggctactcaaggccttgttcgccacagagacctttgcc
atgggcatcaacatgcccgcccgcactgtcctgttcaccaacgcacgcaagtttgatggc
aaagacttccgctggatcacgtctggtgagtatatccagatgtccggtcgagctggcagg
agagggatggatgagaggggtatcgtcatcttcatggtggatgacaagatgagccctgca
attgggaaacagctgcttaagggctcggcagaccctctgaacagtgccttccatctcacc
tacaacatggttctcaacctgctgcgcgtggaggagatcaacccggagtacatgctggag
aagtctttctaccagtttcagcactacagggctgtgcccggggtcgtagagaagatggcg
aagctggaagagatgtacaacgccatagagatccccaacgaggagagtgtggtgacctac
tataagatccgccaacagctggccaaactgagcaaggagatagaggagttcatccacaag
ccaaaatactgccttcccttcctccagcctggcagactggtcaaggtcaaaaacgaagat
gctgactttgggtggggcgtggttgttaatttctcaaagaagtcaaacgtcaaggccatt
acgggtgacgcagaccctctatacgtggtagaggtgctggtccactgtagtaaggagagt
gtgaagaagaccgccacagaggctgccaaacctgctgccgctggggagaagggtgaaatg
caggtggttcctgtgatgctccacctcctgacctccatcagttcagttcgcctctgcagc
cccaaagacctgcggccttatgacaaccgacagagcatgctcaaatccatacaggaggtg
cagaagaggttcccggacggcgtcccccttctggaccccatcgatgacatgggcattaag
gacccgggcctgaagaaggtcatccagaaggtggaggcattcgaacacaggatgtactcc
caccccatgcactctgaccccagcctggaggccgtctactccctctgcgagaggaaagcc
ctgattgcgggggatatcaaaggggccaagcgggagctgaagaaggctcgaaccgtgctg
cagatggacgagctcaagtgcaggaagcgcgtcctgaggcgtctcgggtttgccacttcc
tcggatgtgatcgaaatgaagggccgagtggcctgtgagatcagcagtgctgatgagctt
ctactgactgagatggtgttcaacggcctgttcaacgatctgtctgcagaacaggttacc
gctctactcagcgtcttcgtcttccaggagaacgttaccgagatgcccaagctgacagag
cagctggctggacctctgagacagatgcaggagtgtgccaagcgcgttgccaaggtgtct
gcggaggctaagctggaggtggatgaggatacctacctcgacaagttcaagcctcacctg
atggacgtggtctacacctgggctaacggcgccaccttcgcccagatctgcaagatgacc
gacgtctttgaagggagtatcatccgctgcatgcgtcgcctggaggagctgctccgtcag
atgtgtcaagcagccaaggccatcggtaacaccgagctggagaacaagtttgcggagggt
attacgaaaatcaagagggatattgtgtttgctgccagtttatatctgtga
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integrated database retrieval system
