Salvelinus namaycush (lake trout): 120025510
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Entry
120025510 CDS
T07522
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04010
MAPK signaling pathway
snh04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120025510
04020 Calcium signaling pathway
120025510
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120025510
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
120025510
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
120025510
NCBI-ProteinID:
XP_038826006
UniProt:
A0A8U0TSB7
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All DBs
Position
Sna31:complement(22036877..22244492)
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AA seq
2370 aa
AA seq
DB search
MARFAEGLPTRYGAGAGGGGRGAPGAGRGGARAGGPPGGQRMYKQSMAQRARTMAIYNPN
PVKQNCFTVNRSLFIFREDNLIRKYAKRITEWPPFEYLILATIIANCIVLALEQHLPAND
KTPMSERLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILATV
GSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGMLLFFAILMFAIIGV
EFYMGKFHSTCFTVDTGERAAAFPCGTEAPARMCPNSTECTEYWIGPNYGITNFDNILFA
VLTVFQCITMEGWVDILYNANDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKER
ERVEKRQDFLKLRRQQQIERELTGYLEWICKAEEVLLEEEDENAEEKSPLDVLKRGKVKK
SKNDLIGAEEGEDHFTDMSSVAPPGSPFGRASVKSSKLESSSYFRRKERRMRFFIRRMVK
AQSFYWIVLCLVGLNTLCVAIVHYDQPEWLTTALYLAEFVFLGLFMSEMSLKMYGLGARN
YFHSSFNCFDFGVIIGSILEVVWSMIKPGASYGISVLRALRLLRLFKFTKYWNSLRNLVV
SLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEEETPTTNFDTFPAAILTVFQIL
TGEDWNAVMYHGIESQGGVRRGMFSSVYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTK
DEEKQEEEANKKLALQKAMEVKEVSPMSAANISIAAFVKQNRDALSRSSSVSSVHSPKEQ
QRANKIMSVWEQRTNQLRRNNLRASSEALFNELEPEERLRVSSALHLRSDMKTHNDRPLV
VEPGNGDKPRPPEEDRDGADSQQEGGDAHGPQPRKHYRHRERNGENGESRHHTHHSRSRD
HYHPDGPRSKEVKGERSHSREGGQGHRHHHQAGSPEEGVNGGGEGREDRHHHSDRQGDGA
LATRDRLESRGRGHREENGERRKHRSRIVRAQSTLDGDECRENGERNGDRDQGHRDRQTD
SQGESLATSPVQPPAGLQAGEKQEDADNQKNSHRASQAGLNSNTVHIPVTITAPSRETTI
IPMDNIDCESLPLNEEKKDLEQELKNGPKHILPYSSMFVFGQTNPVRRLCHYVVNLRYFE
MCILSVITMSSIALAAEDPVQANAPRNNVLKYLDYVFTGVFTFEMVIKMIDLGLLLHPGS
YFRDLWNILDFIVVSGALVAFACSGTKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFD
CVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKGLEKDCRGKFLDYDGDE
VAAQDREWRKYEFHYDNVLWAFLTLFTVSTGEGWPMVLKHSVDATYEDEGPSPGFRMETS
IFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAMSECSLEKNERACIDFVINAKPLTRYM
PADKQSFQYKMWQFVVSPPFEYSIMTMIALNTVVLMMKFHGAPELYEAMLKYLNIVFTAL
FTLECILKIIAFGPLNYLKEAWNVFDFVTVLGSITDILVTEIKTDKLINLSFLRLFRAAR
LIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIELNEESAINH
HNNFQTFFQALMLLFRSATGEAWHEIMLSCLSNRPCDKLSGSGGKECGSDFAYFYFVSFI
FLCSFLMLNLFVAVIMDNFEYLTRDASILGPHHLDEFIRVWAEYDPAACGRMTYLDMYEM
LRHMSPPLGLGKKCPPRIAYKRLVKMNMPIADDNTVHFTSTLMALIRTALEIKLASGVLA
QRLCDADLRKDISRVWPNLPQKTIDLLVTPYKNDEFNELLCPFAVVNRELTVGKVYAALM
IFDYYKQNRAKRLEQQLGLDFTGTIKNKKGPAFFRHMPMTHMQEEGTTVSRANPLPSSQP
EPESQPEPMPSTTSLTNGEAVPSTRSPIKESGEQLSQEGQRSSSRKRILQRGQSEDVPYS
NKPQESVEMRQVENGADIGGYSGLDGHGRAASMPRLDSQYYRNHPRHLPGTYLAPIADIS
PIRRSASTLASQCPQEMSLRDYTLERPSQAQAQASSAPGQAQDRHHHHHHHRCHRRRDKD
RDKKQKSLDRATSVQPSSTACPSVDPPVEGLTRERAREHDRGRPHERRHHSAAGETKRYY
SCERYVGREHCHTKSAGPSRSTSPGETHDLGLFKQSIGMSKGSQVVLTFGSSPSCRGRRQ
LPQTPLTPRPAVAYKTGNSLPMQFGATGHQSFLSRGLSERDALLESPPIPVTLIGSDPNL
SPCLRNAPPRRLPEEPDNFQDAVSNHGGSHSPRIIASASHGAAGPSFAPAPQGRGGIPNG
YHFTLGVNAVSSSSPRGTGSFREKEEDDWC
NT seq
7113 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcttcgcagaaggtctacccacccgctatggagctggagcaggtggaggaggc
agaggtgcgcccggcgcaggcagagggggcgcccgggctggtggacctccaggcggccaa
aggatgtacaagcagtcgatggctcagagagccaggacaatggccatatacaaccctaac
cctgtcaaacagaactgcttcactgtcaaccgatccttgttcatctttcgagaggacaat
ctcattaggaagtatgctaagcgaataaccgaatggcctccgtttgagtacttgatcctg
gccaccatcatcgccaactgcatcgtactggctctggagcagcacctaccagccaatgac
aagactcccatgtcagaacgtctggatgacacagagccctactttattggaatattctgt
ttcgaggctggcattaagattatcgccttgggctttgcatttcacaaaggctcgtacctc
cgcaacggctggaacgtaatggactttgtggtcgtcctcactgggatcctggccacggtg
ggctcagactttgacctgaggactctgcgagcggtgagagtactgagaccactcaaactg
gtgtctggcatccccagtcttcaggtggtattgaagtctatcatgaaggccatggtgcct
ctgctccagataggcatgctgctcttcttcgccatactcatgtttgccatcatcggagtg
gagttctacatgggcaagttccactccacctgcttcactgtcgacactggtgagcgagca
gcagcgttcccctgtggtacggaggccccagccaggatgtgtcctaatagtacagagtgt
acagagtactggatcggccccaactacggcatcaccaactttgacaacatcctgtttgcc
gtgctcaccgtcttccagtgcatcaccatggagggatgggtggacatcctctacaatgct
aacgatgcctcggggaacacctggaactggctctacttcatccccctgatcatcatcgga
tccttcttcatgctcaacttggtcctgggtgtcttatcaggggagtttgccaaagaaaga
gagcgtgtggagaagaggcaggactttctaaagctgcgcagacagcagcagatagagaga
gagctgacgggatacctggagtggatatgcaaggcagaggaggtgctgctggaggaggag
gatgagaatgcggaggagaagtcccctctggacgtgttgaaacgaggcaaggtcaagaag
agtaagaatgacctgattggtgctgaggagggagaggatcacttcactgacatgtcctct
gttgcccccccaggctctccgtttggccgggccagcgtgaagagcagtaagctggagagc
tcgtcctacttccgccgcaaggagaggagaatgcgtttcttcatccgtcgcatggtcaaa
gcccagagcttctactggatagtactgtgtctggtgggcctcaacacactgtgtgtggcc
atcgtccactacgaccagcctgagtggctcaccactgccctctacctggcagagtttgtg
ttcctgggtctgttcatgtctgagatgagcctgaagatgtacggcctgggagccaggaac
tacttccattcctctttcaactgcttcgactttggtgtgataatagggagtatacttgag
gtggtgtggtctatgatcaaaccaggggcatcctatggcattagtgtgctgagggctctt
cgtctgctcaggttattcaaatttaccaagtactggaactccctgaggaacctggtagtg
tctcttctcaactcaatgaagtccattatcagcttgctcttcctcctcttcctcttcatc
gttgtctttgccctgctgggcatgcagctcttcggaggacagtttaattttgaagaggag
acgccgacgaccaacttcgacactttcccggcggccattctcaccgtcttccagattttg
actggcgaggattggaatgcagtgatgtatcatggtattgagtcccaggggggcgtacgg
cggggaatgttctcctcggtctacttcatcgtcctcacactctttggaaactacacgctc
ctgaacgtcttcttagctatcgccgtcgacaacctcgccaatgcacaggagctcaccaag
gatgaggagaagcaggaggaagaagccaataagaagctggccctgcagaaggccatggag
gtgaaggaggtcagccccatgtcagcagccaacatctctatcgctgcttttgtaaagcaa
aatcgagatgcactctctcgcagctcgtccgtctccagcgtgcattcacctaaggagcag
cagagagccaataagataatgtcagtgtgggagcagcgcaccaaccaactgcgtcgaaac
aacctgagagctagctccgaggctctgttcaacgagctggaacccgaggagcgtctgcgt
gtctcctccgccctccacctgcgctccgacatgaagacccacaatgaccgccccctagtg
gtggagccaggtaacggggacaaaccccgaccccccgaggaggacagagacggagcagac
tcccagcaagagggaggagacgcccacggcccacagccacgcaagcactaccgtcaccgg
gagaggaacggggagaatggggagagcaggcatcacacccaccacagccgcagtagggac
cactaccacccagacgggccccggtccaaagaggtcaagggggagaggagccatagtcga
gagggggggcagggccacaggcaccatcaccaggctggatccccagaggagggggttaac
ggagggggagagggaagggaagaccgccaccaccactccgacagacagggggacggggct
ctggctaccagggacagactggagagcaggggccggggccacagggaggagaacggagaa
aggaggaagcaccgctcacgcatagtcagggcccagtcaacactggatggagacgagtgc
agagagaacggagagagaaatggagacagggaccaaggacacagggacaggcagaccgac
tctcaaggggagagcttggccaccagtcctgtgcagcctcctgcaggtctgcaggctgga
gagaagcaagaggatgctgacaaccagaagaacagccacagagccagccaggcaggcctg
aacagcaacactgtccacatccctgtcaccatcaccgccccatccagagagaccaccatc
atacccatggataacatagactgtgagagcctccccctgaacgaggagaagaaggacttg
gagcaggagctgaagaacggccccaaacacattctcccctacagctccatgtttgtgttt
ggacagaccaacccggtgcgtcggctgtgccactacgtggtgaacctgcgttactttgaa
atgtgtatactgtcggtcatcaccatgagcagcatagccctggctgcggaggaccctgtg
caggccaatgcaccacgcaacaacgtgctcaagtatctggactacgtcttcacaggagtg
ttcacctttgagatggtgattaagatgatagacctgggactgctcctccatcctggttct
tacttccgggacctgtggaacatcctggactttattgtggtcagtggagctctggtggcg
ttcgcctgctcaggaactaaaggcaaggacatcaacaccatcaagtctctcagggtgctg
cgagttctaaggcctctgaagaccatcaaacgactgccaaaactcaaggctgtgtttgac
tgtgtggtcaactctctgaagaacgtgctcaacatcctcattgtctacatgctcttcatg
ttcatcttcgctgtgatcgctgtgcagctgttcaagggcaagttcttctactgcaccgac
gagtctaaaggtctggagaaggactgcaggggtaagtttctcgactatgacggtgatgaa
gtggcggcccaggatcgtgagtggaggaagtatgagttccattatgacaatgtgctgtgg
gccttcctcaccctattcaccgtctccaccggggagggctggccaatggtcctaaagcat
tctgtggatgccacctatgaggatgagggtcccagcccaggctttcgtatggagacttct
atcttctatgtggtctactttgtggtctttcccttcttctttgtcaacatcttcgtggct
ttgatcatcatcaccttccaggagcagggagacaaggccatgtcagagtgtagtctggag
aagaacgagagagcttgtatcgactttgtcatcaacgccaagcctctgacgcgctacatg
ccagcagacaagcagtcgttccagtataagatgtggcagtttgtggtgtcgccgcccttt
gagtactccatcatgaccatgatcgcactcaacactgtggtgctgatgatgaagtttcac
ggtgctccggagctgtatgaggccatgctgaagtacctgaacattgtgttcacagctctc
ttcacactagagtgcatcctcaagatcatcgctttcggaccactgaattacctgaaggaa
gcttggaatgtgtttgactttgtgacagtattggggagtatcacagacatcttggtcaca
gagattaagacggacaagctgatcaatctgagtttcctgaggctgttcagggcggccagg
ctcatcaagctgctgaggcagggttacaccattcgcatcctgctatggacctttgtccag
tccttcaaggccctaccatacgtctgcctcctcatcgctatgctcttcttcatctacgcc
atcatcggcatgcaggtgtttggaaacattgagctgaatgaggaatcagccatcaatcac
cacaacaacttccagaccttcttccaggctctgatgcttctgttcaggagtgcaacaggt
gaggcgtggcatgagatcatgctgtcgtgtttgagtaaccgtccatgtgataagctgtca
gggtccggagggaaggagtgcggcagtgactttgcttatttctactttgtctccttcatc
ttcctctgctcctttctgatgctcaatctgtttgtggcggtcatcatggacaactttgag
tacctgaccagagacgcctctatcctggggcctcaccacctggacgaattcatccgtgtt
tgggccgagtacgaccctgctgcctgtggccgtatgacctacctcgatatgtacgagatg
ctccgtcacatgtcccctccactaggtttgggaaagaaatgcccgcccagaatcgcctac
aagcgattggttaagatgaacatgcccattgccgatgacaacacggtgcacttcacgtcc
actctgatggcgctcatccgcactgctctggagatcaaactggcgtctggagtcctggcc
cagcgtctgtgtgacgctgacctgaggaaagatatctccagagtctggcccaacctgcct
cagaagactatcgacctgctggtcacaccatataaaaatgatgagttcaatgagcttctt
tgcccctttgcggttgtaaaccgagagctgacagtggggaaggtctacgctgccctcatg
atctttgactactacaagcagaaccgggccaagagactggaacagcaactgggactggac
ttcacagggacaattaagaataaaaagggcccagccttcttccgccacatgcccatgacc
catatgcaggaggaggggacaacagtctccagagccaatcccctgccatcctcccaacct
gaaccagagtctcagccagagcccatgccatccaccacctctctaaccaatggggaagca
gtaccaagcactagaagtcccataaaagagtcaggagagcaactgtctcaggagggccag
cggtccagcagtagaaaaaggattctacagaggggccagtcagaggacgtgccctactcc
aacaaacctcaggaatcagtggagatgaggcaggtggagaacggtgctgatatagggggc
tactctggtctggatggccatggcagagcagcctccatgccaagactggactcccagtac
tatcggaaccaccctcgtcacctacctgggacctacctggcacctattgctgacatcagt
cctatcaggcggtcggcgtccacgttggcttcccagtgcccccaggagatgagtctgaga
gactacaccctggagcggcccagccaggcccaagcccaggcctcctcagccccaggtcaa
gcccaggacaggcaccatcaccatcaccaccaccgctgtcacagacgcagggacaaggac
agggacaagaagcagaagtcacttgacagggcaaccagcgttcagccttctagtacagca
tgtccgtctgttgaccctcctgtggagggcttgaccagggagcgggcgagggagcatgac
cgtggccggcctcatgagaggaggcaccactctgcagccggggagacgaagcgttactac
tcctgtgagcgctacgtaggcagggagcactgccacaccaagtcagctggccccagccgc
tccacctcccctggagagacccacgacctaggtctcttcaagcagagtatcgggatgagt
aaaggcagccaagtggtcctaacctttggatctagtccatcctgccgtgggcgcagacag
ctcccccagacccccctgaccccccgccccgccgtggcctacaagactggaaactccttg
cccatgcagtttggtgccacagggcaccagtcctttctcagtcgtggactctcggagcgt
gacgccctgctggagtcaccccccatacccgtcaccctcattggctcagacccaaacctg
agcccctgtctgcggaacgcccctccacgcagactccctgaggagcctgacaacttccag
gatgctgtgagcaaccatggagggagccactcccctaggatcattgcctcagcctcccat
ggggctgctgggccctcttttgcacctgccccacagggccggggtgggatcccaaacggg
taccactttactcttggggtcaatgccgtttcaagctccagccccagagggactgggagt
ttccgtgagaaggaagaggatgactggtgctag
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integrated database retrieval system
