Salvelinus namaycush (lake trout): 120025770
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Entry
120025770 CDS
T07522
Name
(RefSeq) retinoic acid receptor RXR-alpha-A
KO
K08524
retinoid X receptor alpha
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03320
PPAR signaling pathway
snh04148
Efferocytosis
snh04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120025770
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
120025770
03320 PPAR signaling pathway
120025770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120025770
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
snh03310
]
120025770
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
120025770
Nuclear receptors [BR:
snh03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
120025770
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Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
120025770
NCBI-ProteinID:
XP_038826337
UniProt:
A0A8U0PK49
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Position
Sna31:29800457..29957294
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AA seq
498 aa
AA seq
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METKPFLSLGFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHQRRISTDSSGQVTSSPLGS
PTSHRGMHPSLLSPSSMGPSGSLHSPISTLSSPMNGLGSPFSVISSPMGPHSMSSPGMGY
GPSVSPQLNSPMNSVSSSEDIKPPLGLNGVMKVPAQPSQGCMPLSLTKHICAICGDRSSG
KHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLACGMKREA
VQEERQRAKERSENEVESTSSVNEDMPVEKVLEAELAVEPKTETYIETNLGMPSNSPNDP
VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI
LLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLS
NPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD
TPIDTFLMEMLEAPHQMT
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcttgtcattggggttcctgaagccccagtgctcgctggctccg
cctccccagcgaggacgctcgggggaggcctgctcctgtttcaccggcatgtgtcacctc
caccagcgccggatatctacagattcatcaggccaggtgacctcgtctcccctgggctct
cccacgtcccaccggggcatgcacccatccctgctcagcccgtcctccatggggccctcg
ggctccctgcactctcccatcagcaccctgagttctcccatgaacggcctgggctcgcca
ttctctgtcatcagctcccccatgggcccacactccatgtcctcgcccggcatgggctac
ggccccagtgtcagcccccagctgaactccccgatgaactcggtcagcagctcggaggac
atcaagcccccgctgggtctcaacggggtgatgaaggtgcccgcccagccctcacaaggg
tgcatgcccctctccctcaccaaacacatctgtgccatctgcggggaccgctcgtcaggt
aaacactatggagtgtacagctgtgagggctgtaaaggcttcttcaagaggacagtgagg
aaggacctgacctacacctgccgagacaacaaggactgtctgatcgacaagcgccagcgc
aaccgctgccagtactgtcgctaccagaagtgtctggcctgtggaatgaagagagaagcc
gtccaggaggagcgccagcgggccaaagagcgcagtgagaacgaggtggagtccaccagc
agcgtcaacgaggacatgcccgtggagaaggtcctggaggcagagctcgctgtggaaccc
aagacagagacctacatcgagaccaacctgggcatgccatccaactcgcccaacgaccca
gtgactaacatctgccaagcagccgacaagcagctcttcacgctggtggagtgggccaag
aggatcccccacttctctgagttgcccctggatgaccaggtcatcctcctacgagcaggg
tggaacgagctcctcatcgcatccttctcgcaccgttcgatagcggtgaaagatgggatc
ctcctggcaacaggtctccacgtccatcgtaacagcgcccacagtgctggagtgggagcc
atctttgacagagtgctcacagaactggtatccaagatgagagacatgcagatggacaag
acagagctgggttgccttcgggctatcgtcctcttcaacccagactctaaaggcttgtct
aacccaggcgaggtggaggctttgagagagaaggtctacgcctctctggaggcctactgc
aaacagaaatacccagatcagcctggcaggtttgccaagctgttgctgcggttaccagcc
ctgcgctccattggtctgaagtgtctggagcacctgttctttttcaagctcatcggggac
acgcccattgacaccttcctcatggagatgctagaggcgccccaccaaatgacataa
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