Salvelinus namaycush (lake trout): 120025869
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Entry
120025869 CDS
T07522
Name
(RefSeq) transportin-1-like
KO
K18752
transportin-1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120025869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120025869
03009 Ribosome biogenesis [BR:
snh03009
]
120025869
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120025869
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
120025869
Pre-60S particles
120025869
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IMB1
HEAT_2
Vac14_Fab1_bd
Cnd1
TPR_IPO5
TOR1L1_N
Arm
IBN_N
HEAT_EF3_N
HEAT_MROH2B_C
PDS5
TPR_DNAAF5
Adaptin_N
HEAT_GCN1_C
CEP104-like_TOG
TTI1
MMS19_C
UNC45-central
Ltn1_1st
Dopey_N
TPR_TTI1_C
INTS7_N
RTP1_C1
SCD
VPS15-like_hel
HEAT_DAAF5
ARM_TBCD
RRN3
Motif
Other DBs
NCBI-GeneID:
120025869
NCBI-ProteinID:
XP_038826504
UniProt:
A0A8U0PMH4
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Position
Sna31:9949626..10010438
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AA seq
896 aa
AA seq
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MECEWKPDEQGLQQILQLLKESQSPDTSTQRSVQQRLEQLNQYPDFNNYLIFVLTKLKSE
DEATRSLSGLILKNNVKAHYQNFPNGVSDFIKSECLQNIGDASPLIRATAGILITTIASK
GELQNWPELLPKLCLLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNVMIPKFL
QFFKHSSPKIRSHAIACVNQFIISRTQALMLHIDDFIENLFALATDEEPEVRKNVCRALV
MLLEVRMDRLLPHMHNIIEYMLQRTQDQDENVALEACEFWLTLAEQPVCKDVLCNYLSKL
TPVLVNGMKYSEIDIILLKGDVDEDDDEAIPDNEQDIRPRFHRSRTVAQQHEGDRDGIED
DDDDDDDDDLDDDDTISDWNLRKCSAAALDVLANVFRDDLLLPILPLLKELLFHPEWVIK
ESGILVLGAIAEGCMQGMIPYLPELIPHLVQCLSDEKALVRSITCWTLSRYAHWVVSQPP
DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFNKYQ
HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIAKWNQLKDEDKDLFPLLECLSSVA
TSLQSGFLPYCEPVYQRCVNLVQKTLAQAMLHQSQPDQYEAPDKDFMIVALDLLSGLAEG
LGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG
TNLNPELISVCNNATWAIGEISIQMGAEMQPYVTMVLHQLVEIINRPNTPKTLLENTAIT
IGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPGGVVQDFIF
FCDAVASWVNPKDDLRDMFGKILHGFKNQVGEDNWRRFSDQFPLPLKERLAAFYGV
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggagtgcgagtggaaaccagatgagcaaggacttcagcaaattctacagcttttgaaa
gagtcccagtctccggatacgtccactcaaagatccgtccagcaaagattggaacagctc
aaccaatacccagacttcaacaactacttgatattcgtgctgacgaagttgaaatcagaa
gatgaggcgacccgctctcttagtggtctgatcctaaagaacaatgtgaaggcccactac
cagaacttccccaatggagtgtctgacttcattaagagcgagtgtctacagaacattgga
gacgcctcgcccctcatccgggccaccgcgggtatcctcatcaccaccattgcctctaaa
ggggagctgcagaactggcccgagttgctgcccaaactctgcctcctgctggactctgag
gactacaacacctgtgagggggcgtttggcgctcttcagaagatctgtgaggactcagca
gagatcttggacagtgacgtgttggaccgtccgctcaacgttatgatcccaaagttcctg
cagttcttcaaacacagcagccccaagataaggtctcatgccatcgcctgcgtcaaccag
ttcatcatcagtaggacccaggccctaatgctgcacatcgatgacttcatcgagaacctg
tttgccctggcgactgatgaggagccagaggtgaggaagaacgtttgcagagctctggtc
atgctgctggaagtccgcatggaccgtctcctaccgcacatgcacaacatcatagagtac
atgctgcagaggactcaggaccaggatgagaacgtggctctggaggcctgtgagttctgg
ctgacactggctgaacagcctgtctgtaaggatgtgctgtgtaactacctctccaagctg
actccggtgctcgtcaacgggatgaagtactcggagatcgacatcattctgctcaagggt
gatgtggacgaggatgatgatgaggccatccctgacaacgagcaggacatcaggcccaga
ttccaccgctcccgtaccgttgcccagcaacacgagggcgaccgtgacggcatcgaggac
gatgacgacgatgatgatgatgatgacctggacgatgatgacaccatctctgactggaac
ctccgtaagtgttcagcagcagcgttggacgtgttggcaaacgtgttcagagatgacctg
ctcctccccatcctgcctctcctcaaagagctgctcttccacccagagtgggtcatcaag
gagtctggtatactggtcctgggggccatcgctgagggttgtatgcagggtatgatcccc
tacctgccagagctcatcccccacctggtgcagtgtctgagtgatgagaaggccctggtg
cgctccatcacctgctggaccctgagtcgatatgcccactgggtggtcagccagcctcct
gacacctatctgaagccactgatgactgagctcctcaaacgcatcctggactccaacaag
agggtgcaggaggctgcctgcagtgcctttgccactctggaagaagaggcgtgtacagag
ttggttccctacctggcctacatcctggacactctggtgtttgccttcaacaagtaccaa
cacaagaacctgcttatactgtacgatgctatagggacgcttgctgactccgtgggacac
cacctcaacaagccggagtacattcagatgctgatgcctccactgatagcaaaatggaac
cagctgaaggacgaagacaaggatctgttccctttactagagtgcctgtcgtcagtagcc
acgtctctccagagtggtttcctgccctactgtgagcctgtgtaccagcgctgtgtcaac
ctggtgcagaagaccctcgctcaggccatgctccaccagtcccagccagaccagtacgag
gctcctgataaggactttatgattgtggctctggacctgctcagtggactggccgagggg
ttgggcggcaacatcgagcagctggttgcccgtagcaacatcctcacgctcatgtaccag
tgcatgcaggacaaaatgccggaggtgcgtcagagctcctttgctctgctgggtgacctg
actaaagcttgtttccagcatgtaaagccatgcattgctgatttcatgcctatactaggc
actaatctgaacccagagttgatatcagtgtgcaacaatgcaacgtgggcaatcggagag
atatctatacaaatgggggctgagatgcagccctacgtgaccatggtcctgcaccagctg
gttgagatcatcaacaggcccaacaccccaaagaccctgctggagaacacagcaataaca
attggtcgtcttggttacgtttgtcctcaagaggtggcacccatgctacagcagtttata
agaccctggtgcacctctctaaggaacataagagacaatgaggaaaaagactcagcgttc
cgaggcatctgcactatgatcagtgtcaaccctggaggagtggtacaggactttatattt
ttctgtgatgcagtggcctcgtgggtaaatccaaaggatgatctgcgagacatgttcggc
aagatcctccatgggttcaagaaccaggtgggcgaggataactggaggcgtttctcagac
cagttcccactgcctctgaaggaacggctggcggccttctacggggtgtaa
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