Salvelinus namaycush (lake trout): 120026052
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Entry
120026052 CDS
T07522
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3-like isoform X1
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120026052
03036 Chromosome and associated proteins [BR:
snh03036
]
120026052
Spliceosome [BR:
snh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120026052
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
120026052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
HAT_PRP39_N
LSM_int_assoc
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
RRM_occluded
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
Lsm_interact
Motif
Other DBs
NCBI-GeneID:
120026052
NCBI-ProteinID:
XP_038826804
UniProt:
A0A8U0PN33
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All DBs
Position
Sna1:complement(28961007..28976542)
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AA seq
957 aa
AA seq
DB search
MAATGDAEETQLQEMEEEAGMENEMDSDEEEGLGIENSDDEIDDSSEDEKETEAEIQRLE
EQLSINAFDYNCHVDLIKLLRQEGELPRLRKARQKMSELFPLTEEIWLDWLKDEIHLTEE
EPNREKVYELFETAVKDYICPEIWLEYAQYSIGGMGLPGGMEKVRSIFERALTAVGLHMT
KGATVWEAYREFENAILATVQPPPGSVPTCEQQELLNTQLERIHTLFRRQLSIPLMDMDG
TYAEYEEWSDQGVSDTVSQKYKRALKQMEKSKPYEETLMIAEPPKLAEYQTYIDYEQKEG
DPARIQIIFERALSENCLVPDMWAKYTKYLDRQLKIKDLVLSSHDRAVRNCSWTMGLWKN
YLLALERHGADHHTISDVFEKALNAGFIQATDYVNIWEVYLDYLRRRVDFSKGESTLKLE
SSRELEELRAAFTRSLDYMKQDVEERFSESGDPSCTIMQVWAKIEALHCKNMQKARELWD
SIMTKGNAKFANMWLEYYNLERSYGDALHCRKALHRAVQCTSDYPEHVCEVLLTFERVEG
SLEDWDAAVQKTETRLNRVNEQRSKVTEKEAHVARQEEEKTEQRRRAKADKKNQKKGQKG
SRPGDKRKAEDKNYEDEWGEESEQPPKRHRGESDQGFRGGGGGAGLIGTESGLFGRRAPP
GRRQEPPGAKRGQQVAPATVWKTQEDDPELRKDDCSVFISNLAFTMDDPEKRLKKLFEPC
GPVQSVRPVYAAKGFRGYCYVQFEGKASVLEALKMDRQEVEGRPMFVSPCVDKNKNPDFK
VFKYNTNLEKHKIFISGLPFSCTKEQLEELCKDHGTIKDIRLVTNRSGKPKGLAYVEFGD
EAQASQAVLKLDGTVLQEHTLSVAISNPPRRNTADKPGFSRPVGAMMPRSMVYGSRGKGR
TQLSLLPRSLNRQTGSESKAENGTAPKPTGGASGDAGIEAQAKPLSNSDFAKMLFKK
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaacgggggacgcagaggaaactcagttgcaagagatggaggaagaggcaggg
atggaaaatgaaatggattcagatgaagaggagggtttgggaattgaaaattccgacgat
gaaatagacgattcatcagaagacgaaaaagagactgaagccgaaattcagcgtttggag
gagcagctgtccatcaatgcttttgattacaactgtcatgtggacctcataaaactcctg
aggcaggagggggagctgcctcggctgcgtaaggcaaggcagaagatgagtgagctcttc
ccactcactgaagagatttggctggactggctcaaggatgagatccacctaacagaagag
gagccgaaccgggagaaagtctatgagctctttgagacggctgtgaaagattatatctgc
cctgaaatctggctggaatatgcccaatactctatcgggggcatgggactgcctggtggg
atggagaaggtgaggtccatcttcgagagagccctgacagccgtggggctgcacatgacc
aagggagcgaccgtgtgggaggcctacagggagtttgagaatgccatactggcaactgtt
cagccgccccctggcagcgttcccacctgcgagcagcaggagcttctgaacactcagctc
gagcgcatccacactctgttccgccgccagctgtccatccccttaatggacatggacgga
acatatgcagagtatgaggagtggtctgaccagggggtgtctgatacagtctcccagaag
tacaagagggccctgaaacaaatggagaagagcaagccttatgaggagactctgatgata
gccgagccgcccaagctggcagagtatcagacttacattgactatgagcaaaaggagggt
gacccagcacggatccaaatcatctttgagcgggcattgtcagaaaactgcctggtacca
gacatgtgggcaaagtacaccaaatacctggaccgccaactgaagatcaaagacctcgtc
ctgtcctctcacgaccgtgcggtcaggaactgctcctggacaatgggcctgtggaagaac
tacctgctggccctggagaggcatggggccgaccaccacactatctcagatgtttttgaa
aaggccctgaatgctggtttcatacaagccacagattatgtgaatatctgggaagtgtac
ctcgattacctgaggcggcgcgtcgatttcagcaaaggtgaaagcaccttaaaattggag
tcgagcagagagctggaggagctgcgggcagccttcacccggtctctggactatatgaaa
caggatgtggaagagaggtttagtgaaagtggagacccctcttgtactatcatgcaggtc
tgggcaaagatagaggccttgcattgtaagaacatgcagaaggccagagaactgtgggac
agcatcatgacaaaagggaacgccaaattcgccaacatgtggttggagtactataacctg
gagaggtcgtacggagacgctctccactgcaggaaagccctccacagggctgtccagtgt
acctccgactacccagagcatgtgtgcgaggtcctgctcacctttgagagggttgagggt
tctctggaggactgggatgcagcggtgcagaagactgagacacggctgaacagagtcaat
gagcagaggtccaaggtgacagagaaagaggcccatgtggctcgacaggaggaggagaag
actgaacagcgacggagggccaaggcagacaagaagaaccagaagaagggccagaaaggc
agcaggcctggtgacaagaggaaggcagaggacaagaattacgaggatgagtggggagag
gaatcggagcaacctccaaagaggcacagaggggagagcgaccaaggcttcaggggggga
ggcggtggtgctgggttaattgggacagagagtgggctgtttgggaggagagcccccccc
ggccgcagacaggaaccccctggtgctaagaggggccagcaggtggcaccagccaccgta
tggaagacccaggaagacgaccccgagctacgcaaggacgactgcagtgtgtttatcagt
aacctggccttcaccatggacgatccagagaagaggctgaagaagttgtttgagccctgt
ggtcctgtccagtcggtgcgccccgtctatgctgccaagggcttcagagggtactgctac
gtacagtttgagggcaaggcgtctgtgctcgaggccctgaagatggaccggcaagaggtg
gaaggcaggcccatgttcgtatcaccctgtgtggataaaaacaagaaccctgattttaag
gtgtttaagtacaacacaaacctagagaaacacaagatctttatctcgggcctgcccttt
tcctgcaccaaggagcagctagaggagttgtgcaaggatcatggcaccattaaagacatc
cgcttggtcaccaaccgctcaggcaaacccaagggtctggcgtacgtggagtttggggat
gaggctcaggcctctcaggccgtgctgaagttggatggcacagtactacaggaacacaca
ctctctgttgccattagcaacccgcctcgcagaaacactgccgacaagcctggcttcagc
agacccgtgggagccatgatgccccggtctatggtctatggatcgaggggaaaagggcgc
acccagctctcactactccctcgttcactaaatcggcagactggatcagaaagtaaagca
gagaatgggactgcacctaaacccacaggtggcgcatctggagatgctgggattgaagca
caagccaagcccttgtctaattcagactttgcaaaaatgcttttcaaaaagtga
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