Salvelinus namaycush (lake trout): 120026445 Help Entry 120026445         CDS       T07522                                  Symbol setx Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism snh  Salvelinus namaycush (lake trout) Brite KEGG Orthology (KO) [BR:snh00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:snh03021]     120026445 (setx) Enzymes [BR:snh01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      120026445 (setx)     5.6.2.5  RNA 5'-3' helicase      120026445 (setx) Transcription machinery [BR:snh03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      120026445 (setx) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 SEN1_N AAA_19 AAA_30 Viral_helicase1 UvrD-helicase ResIII AAA_22 AAA_16 AAA_27 DUF4164 FapA nSTAND3 AAA_7 UvrD_C_2 Motif Other DBs NCBI-GeneID:  120026445 NCBI-ProteinID:  XP_038827236 UniProt:  A0A8U0TTG2 LinkDB All DBs Position Sna31:complement(8255766..8315300) Genome browser AA seq 2451 aa AA seqDB search MMSMCRWCTSLGDDVAKLLQRYCAGSWLAEDEKAVNEEKALNDDLDKCLECVVAYHRAKE ELPGLHRRLWELETSRLLDLFSHAAKDAQPAKDLSYVEEDGREIGVSNISPAVYEDRLGV PLSEVLKYPYLLASPELSEMCVEAICKMEEYNSFRVCSKDPGIYLLLVHPNETVRRWAIG AARSLGKVDRDDFYDLQDIFTCMFYIVELRIPQNFPDMDTSYDPTTKMTLLQPHLYDSKN AKNYWLGICMLLTQLDAQAMDSLFLGPDKQANILLCILNALKDEEPSNEMDPFWPVLQCF MVILDCLGSRFWGQIEPSQAFQAITQSPSYSAELESIRQQTMISRVKTETTCDDDMVTCS QMVYDSNTKVSKGSRRSRGVASNVVYEDMSSLVNLLHSEVGQALRVHDSTFLWFIPFVKS VMDLDEHSVLYITEVVHYLCGEISTDLPTPQVCICDKVTEFFTLILVHIIELHLGSGRMN MLYYCAPKWVGVLVKCSTLPGDAFVHTSEGPVSHSVSSTSSLRVSVPRKASTSRAVPQAC MHIIRSLLKEGTRLNPNSKCHHFLNRLNKHLREGQQREWKLIRSEIQELQICLKDYVKMM MNRPTISTSPPEPLAIEAGPVAPTTPPLQSSNDPSGPSSLAEFNPPIKREGLWDDVEGST SGGGDSNGVQSGWDIDLALLKKEPLTPEEEFVEPTNDSRPTQDNVTSLRADPEKIQVIKS RLGQLMTKKSNSERARPSVGLSEFGKEKPENLLTSRREEASNLHGISRPPPCLQESVDNV PLSVLKSNLKGKEGSKSSRDRSKGNSRQFDRPQSPPKSTSDVIVISDDEATLDVVRARST ECFSETSQIKNEPDASDQNPSPWRDYDGDMSESQVFEFETQEDMASAWSNRDSESNIPPE KLKEDSPVSPTSREPLSSWECDTQPIYDEDIERACQQVEKELEKPKTPPQGLKRAIVVKK RNLLVDAKPLASKCLSKKPTVVEKLIKEPVKDAPHAVTPPLRNCSSTVRSNRLETETHFS LTTSAISRKTSLTPAIVPPKKVRKATEPVSTAEKLGLKKKVRKAFDLSQGSRDIVGDLRH HGATVNVPQAKKPTRQTKRSKVTFPQKRVVKGSNNKLFQFFRQSKQALGAGISAKAEPMK RNPKKIDEIQTPSFVTEEDDEDEDLQCSQLDPTRHEEQLTVNCSSQRANENKPAPSNTVS SVVSNMDRQISPYFQRNDDVTPGPSGQVPKSNEGEDYDAEWMYLTQMEPTEMEMCSQMEE EEEELFYTQRDPVDMDIDADSQMPFEEKGGSSDWTWPKQANKGQEAPLATQTFKKPHTPP PSRSSLTQDDDRLFLKPGMSPMSVKKAKPSTTKIYATSSSRSASLVQEMERTANAPLSAS SAPAGRGRPARPVVPARPVVPARSPCVRQPPPYPEVGQSLPLNRLLYKPIAPQLPPKPNP PKQPPPRPEQNIPRPPGQPLRPIQHSNIGSTPQPSTSRHYGPSRSQMPNPEVGFRFDPNY LIQHILKWTFDMFSNYKQFGIPSEVCELPLMEVGFSFSSYDEYYKTFYPLLLTNTFEELA GEWLKNKESGKVITQNLKVVAHEYSHSVWNVSFTASITASDDSRQMYPREEDLVILWLPQ NTGAYPWHEQGFLDPQEQFGYVQRSNVCNGGVGQCPTLNLMIKTLGNVTLANKQAVRCDV VGSLVSTLREFRAICLLNGSSMLKPLLVPHVSYFQPGPEVIPSLNLPDYNLDQVRAVRTG LSVIRNQQPTPKICLIHGPPGTGKSKTIVGLLQKLFSEGVQSMAPPGSRQSEPRRMRVLL CAPSNAAIDNLMKKIIPVFKEKCKNIQGNCGDINLVRLGNERTISKNLKPFSLDSQVKNK TQKALMSQDSDIHRHIAQLDESIDKISKMLPKLQKKEEMYHELAMQKSRLLQERQKLSSQ LKQSRSKTQETQAQVLQDAHVVCCTLSTSGSTILESAFRRLGHKPFICIIVDEAGQATET ETLIPMLYQCNALILVGDPHQLPPTVISQKAKELKYGQSLMARLVRNLDDYCKENKKPSP VVFLSCQYRMHPEICEFPSKHIYRKALKTDSETAERRGNFGWPLQPYRVFDVTDGQEVKE GASFSNLKEVQLVVFLLRLMAEKQQVKVGVITPYNAQKDRINREMAKVVNKNLTVDVDTV EGFQGREMDCIIVSCVRASDEQGGIGFLGNRQRLNVTITRAKFSLFILGHLRTLQENQDW GALIKDAATRDVIISTNEMTFKTDARKIFKQELTRSLSYPLREPGPPPAAPCPTADPPRP APFQLRRSSEPALFAQGRDSPQQPWSTSPPQDADRPRDPRLVVQTPQHRADWNRRAEGIR VPQAEIRRDPRAEREPRGCNSPEQRHPTGYQNQRWAVRERDREQHRSPVSEPYPGDGVNR PPREPRQRDYNRYSATASFNHHTHTHPRKRDPDPRWIPPTYSKRGKERTDH NT seq 7356 nt NT seq  +upstreamnt  +downstreamnt atgatgagcatgtgccgttggtgcacgtcattgggtgacgatgttgcaaaactgctccag aggtactgtgctgggtcttggttagcagaggatgagaaggcagtcaacgaggagaaggcc ctcaacgatgacctcgataagtgcctggagtgtgtggtagcataccatcgggcgaaggag gagttgcctggactgcaccggaggctatgggagttggagacgtccaggctcctggacttg ttttctcatgcagcaaaagacgcacagccggctaaggacctcagctatgtagaagaggac ggccgggaaattggagtgtcaaacatcagccccgcagtgtacgaggaccgtctgggggtt cccctgtcagaggtcctcaagtacccctacctgctggcatcccctgaattgagtgaaatg tgtgttgaggcaatttgtaagatggaggaatataactccttccgggtgtgttctaaagat ccagggatctacctcctcctcgtccaccccaacgagacggttaggcggtgggcaattggt gctgcaaggtctttagggaaggtggaccgagacgacttttatgaccttcaggacatcttc acctgcatgttctacattgtcgagcttagaatcccccagaacttcccagacatggatacg tcctatgatccgacgactaagatgacattgctgcaaccgcatctttacgattccaaaaat gccaaaaactactggttgggtatctgtatgcttctgacacagctggatgcccaagctatg gactccctgttcctggggccagacaaacaggccaacatactgctctgtatccttaatgcc ttgaaggatgaagaaccatccaacgagatggatcccttctggccagtcttgcaatgtttt atggtgatcttggattgtttgggctccaggttttggggtcagattgagccatcccaagcc ttccaggccatcacacaaagccctagctactctgcagagctcgagagcatcagacaacaa accatgatatcacgggttaaaacagaaactacatgtgatgatgacatggtgacctgcagt cagatggtatatgacagtaacaccaaagtgagcaagggaagcagacgctcacgtggtgtg gctagcaatgtggtctatgaggatatgagttctctggtcaatctcctgcattcagaagtg ggacaggcattgcgtgtgcacgacagcacatttctctggttcatcccctttgtgaaatct gttatggaccttgacgaacacagcgtcctatacattactgaggttgtccactacctatgt ggggagatcagcacagacctcccgacgccccaggtttgcatatgtgacaaggtcacagag ttcttcactcttattctggtccatatcatcgaattgcacctggggagtggccgcatgaac atgctctattactgcgctcccaagtgggtgggcgtgttggtgaaatgttccaccctgcct ggtgacgctttcgtccatacctcggaaggtccagtttctcactcagtgtcttccacatcc tccttaagggtcagtgtgccccgaaaggcctctactagcagggctgttccacaggcatgc atgcatatcatccggtccctgctgaaggaagggaccaggctgaaccccaacagcaagtgc caccacttcctgaaccgtctgaacaagcacctcagagaagggcaacagagggagtggaag ctgattaggtcggagattcaggagcttcagatctgtctgaaggactatgtcaagatgatg atgaacaggccaaccataagtacttctccacctgaaccgctggccattgaggcagggcct gtggcaccaaccacaccaccacttcagtcaagcaatgacccctcgggacctagcagctta gctgaatttaaccctcctataaaacgggaagggttgtgggatgatgtcgaaggcagtaca tctggtggtggggattctaatggagttcagagtgggtgggacatagacctagcgttgctg aaaaaggagcccctaacccctgaagaggagtttgtagagccgactaatgattctagacca acccaagacaacgtaacttccttgagggcagatccagagaaaatacaggtgatcaaatcc agactcggccagcttatgaccaagaagtccaattctgagagagccaggccctctgtaggg ctcagtgaattcggtaaagagaaacctgaaaatctgttgaccagccgtagagaggaggca tccaacctccacggcattagccggccccccccatgcctccaagaatccgtggacaatgtg cccctctctgttttaaaaagtaatcttaaagggaaagaaggctccaaatcctcacgagat cggagtaaaggaaactcgagacaatttgaccgaccacaatctccaccaaagtcaacttct gatgtaattgttatatctgatgacgaggctacattagatgttgttagagcaagaagtact gagtgtttttctgagacctcccaaataaaaaatgaaccagatgcctctgaccagaatcct agtccctggcgtgattacgatggagacatgagtgagtctcaggtgtttgaatttgaaaca caggaagatatggcctctgcctggtccaacagagattcggaaagtaacataccacccgaa aagctcaaagaagatagccctgtcagtccaacttcaagagagcctttatcaagctgggaa tgtgatacacaaccgatctatgacgaggatatcgaaagagcctgtcagcaggttgagaag gagcttgagaagcctaagaccccacctcaagggctcaaacgggccattgttgtcaaaaaa agaaatcttcttgttgatgcaaaaccattggcctccaagtgcctgagcaagaaacctacg gtggtagaaaaactaatcaaagagcctgtgaaggatgctcctcatgcagtcacaccgcca ttgagaaattgcagttcaacggtacgttcaaacagactggaaactgagacacacttttcc ttaaccacatcagccatctcacgcaaaacgtcattaactccagccattgtccctcctaaa aaagtcagaaaagccacagagcctgtgtccacagctgagaagcttggccttaagaagaag gtgcgaaaggcctttgatctctcccagggatcacgtgatattgttggtgatctgaggcac cacggcgctacagtcaatgtcccacaggccaagaagcctacccgacagaccaagaggtcg aaggtgaccttccctcagaagagagtggtcaaagggagtaacaataagctgttccagttc ttcaggcagagcaagcaggcattgggagccggaatctctgcaaaggcagagccaatgaag agaaatccaaaaaagattgatgaaattcaaactcccagttttgttacagaggaggacgat gaagatgaggacctgcagtgttcccagctagatcctacccgtcatgaggaacagctgacg gtcaattgcagctctcaaagagccaatgagaacaaaccagcaccctccaatacagtgagt agtgtggtgtccaacatggacaggcagatctctccatactttcaaaggaatgatgatgtc acacctggaccttctggtcaagtccccaaaagcaatgaaggtgaagattatgatgcagaa tggatgtacctcacccaaatggagccaactgaaatggagatgtgctcgcagatggaggag gaggaagaagagttattctacacacagcgggaccctgtagacatggacattgacgcagac agccagatgccctttgaggaaaaaggagggtcttcagactggacatggcctaaacaggca aacaaagggcaagaggctccacttgccacacagacttttaagaaaccgcatactccgcca ccctcgcgctctagcttgactcaggatgatgatcgcttgttcctgaaaccaggaatgtct cctatgtcggttaaaaaggccaagccgtccaccaccaagatctacgcaacctcaagctcc aggagtgcctccttggtgcaagagatggagaggactgccaatgctccattgtcggcttct tctgcccctgctggaagaggtaggcctgcccggccagttgtgcctgcccggccagttgtg ccagcacgaagtccctgtgtacgacaaccacctccttatccagaggttggtcagtctctt ccactgaatcgactcctatacaaacccattgcaccacaactaccacctaaacccaatcca ccaaaacaaccaccacccagacctgaacaaaacatcccccgtccacctggccagcccctc cgccctatccagcacagcaacataggttccaccccccagccctccacctccaggcactat ggcccttcccgaagtcagatgcccaacccagaggttggcttcagatttgaccccaactac ctaattcaacacatcctgaaatggacctttgatatgttcagtaactacaagcagtttggt ataccctctgaggtatgtgagttaccgttgatggaagtaggcttcagcttcagctcttat gatgaatactacaagaccttttaccccctgcttctcaccaacactttcgaggagcttgca ggtgaatggctaaagaacaaggaatcaggaaaggtgataactcagaatttaaaagttgtc gcacacgagtacagccacagtgtttggaatgtcagttttacagcgagcattactgccagt gatgactcccgtcagatgtaccctagggaggaggacctggtcattctgtggctgccccag aatacaggtgcttacccatggcatgagcagggcttcttggatccccaagaacaatttggc tatgtgcagagatccaatgtctgcaacggaggtgtgggccagtgcccaactctgaacctg atgataaagaccctggggaatgtgacgttggcgaacaagcaggcagtgcgctgtgatgtg gtgggctccctggtcagcaccttgagggagttcagggcaatctgtctgctcaatggcagc tctatgctcaagcccctcctggtcccacatgtctcctacttccaacctggcccggaggtc atccccagcctcaacctgcctgattacaacctagaccaggtgagggcggtgagaaccggt ttgtccgtcatcaggaatcagcaacccaccccaaaaatctgcttgatacacggaccccca ggaacgggaaagagcaaaaccatcgtgggcctgctgcaaaagctgttctctgagggagta cagagcatggctcctccagggagcaggcaatctgaaccccgccgcatgagggtcctcctg tgtgccccgtccaacgccgccatcgacaacctgatgaagaagattatcccagtcttcaag gagaagtgcaagaacatccagggtaactgtggggacatcaatctggtgaggcttgggaac gaaaggaccatctccaagaatttaaaaccttttagcctggacagtcaggtgaaaaacaaa acacaaaaggccctaatgtcacaggactcagacatccaccggcacatagcgcagctggac gagagcatagacaagatctccaagatgttgccaaaactgcaaaagaaagaggaaatgtac catgagctggcaatgcagaagtccagactactccaagagagacagaaactcagctcccaa ctcaaacaatctcgcagtaagacgcaggaaacccaggcccaggtactgcaggatgcccat gtggtctgctgcaccttgagcaccagcggcagcaccatcctggagtcggcgttccggcgc ctgggacacaagccctttatctgcatcatcgtggacgaggcagggcaggccaccgagacg gagactctcatccctatgctctaccagtgcaacgccctcatcctggtgggagacccccat cagctgccccccacggttatctcccagaaagcgaaggagttgaagtacggccagtccctg atggctcggctggtgaggaacctagatgactactgtaaggagaacaagaagcccagccct gtggtcttccttagctgccagtaccgcatgcaccccgaaatctgcgagttcccctccaag cacatctaccgcaaggcccttaaaactgacagtgaaactgcagagaggagggggaacttt ggctggcctctccagccctaccgtgtgtttgacgtgaccgacggtcaggaggtcaaggag ggagcgtcgttcagcaacctgaaagaggtgcagctagtcgtgttcctgctgaggctgatg gctgagaagcagcaggtcaaggtgggggtcatcacgccctacaatgcccagaaggaccgc atcaaccgcgagatggccaaggtggtcaacaagaacctcacggtggacgttgacactgtg gaaggcttccagggccgagagatggactgtatcattgtctcttgcgtcagggcgagcgac gagcagggcggcatcggattcctggggaatcgccagaggttgaatgtgaccatcacccgg gccaagtttagcctgttcattctgggccatctacggacactccaggaaaaccaagactgg ggcgcgctcatcaaggatgccgctacacgagacgtcattatatcaacgaatgagatgacc ttcaagaccgacgccaggaagatcttcaagcaggagctgaccaggagcttgtcttacccc ctcagagaaccaggccctccccctgctgccccctgtcccaccgccgatccccccaggcct gctcccttccagctacgccgctcttctgagccagccctgttcgcccagggcagggactcc ccccagcagccctggtcgacatcccctccccaggacgctgacaggcccagagacccccgt ctggtagtccagaccccccagcatagagcagactggaatcggcgagctgaaggaatcagg gtcccacaagccgagatcagaagagacccacgagctgagagggaaccacgaggatgcaac agcccagagcagcgtcaccccactgggtaccaaaaccagagatgggctgtcagggagagg gacagagagcaacaccgttcaccagtctccgagccatacccaggagacggagttaacaga ccaccgagggaacccagacagagagactataatcgctacagtgctacagcctccttcaac caccacacacacactcatccccggaaacgagacccagacccccgatggatccctcccacc tactccaagagggggaaagagaggactgaccactga

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