Salvelinus namaycush (lake trout): 120026807
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Entry
120026807 CDS
T07522
Name
(RefSeq) collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
snh00535
]
120026807
Proteoglycans [BR:
snh00535
]
Extracellular matrix (ECM) proteoglycans
Others
120026807
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Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_ROS1
Fn3_VIN3
Fn3_nematode
VWA_3
Motif
Other DBs
NCBI-GeneID:
120026807
NCBI-ProteinID:
XP_038827449
UniProt:
A0A8U0PPC7
LinkDB
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Position
32:complement(9574321..9649894)
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AA seq
1713 aa
AA seq
DB search
MVRGEQFMCKTPAIADIVILVDGSWSIGRINFRLVRMFLENLVSAFHVEFDKTRIGLAQY
SGDPRIEWHLNTFTTKEAVIDAVKNLPYKGGNTLTGLALTYILENSYKPESGSRAGVPKI
GILITDGKSQDDVKPPAQSLREAGIELFAIGVKNADEKELKAIGSPPEETHVYNVADFSA
MSSIVERLTRTVCDRVEQLDKAIKGESDSITMASPRDLVTSEVTARSFRVSWTHAPGTVE
KYRVVYYPASGGQPEEKMVQGTVDTVVLNYLLSLTEYQMAVFAIYASSASEALRGSATTL
ALPMVNNLELFDITHNTMRARWRVAEGASGYMILYAPLTEGNDADEKEVKVAETVNEVEL
ENLTPDTEYTVTVYAMYGEEASDPMTSQETTLPLTPARNLRFSNVDHSSARLTWEATSKK
ANGYRIMYVKTNGVQTNEMDVGRITTLLLRNLTSLTEYTVAIFAIYDEGQAEPLTDSFTT
KTVPEPLNLRSSEVSTESFRITWEHSAHDVVLYRLTWTPIRGGDTKEMLVNGKMNSHLLT
GLRPITEYEVSLIAVFRNEEESNAVTLTESTVVRLGVRKLLLSDHTTFSMEVSWELQDRK
VRQYRVAYVTARGDRAEETKMVPGGQNSLLLQPLLSDMEYKVTVTPVYADGDGPGVSRMG
RTLPLSAPRNLRVSEEWYNRFRITWDTPPSPTMGYRVVYNPISAPGPALETFVGEDVNTM
LILNLMSGTEYGVRVIASYTTGSSETLTGKARTLYLGVTNLNTYQVRMTSVCAQWGAHRH
ATLYRVVIESLLNGYKQEARLGGGTTRHCFNDLTANTQYKISVYAQLQDTEGPAVSTTEK
TFPVPTPAPTRPPTTTAPPSIPSVKEVCKAAKADLAFLVDGSWSIGDDNFLKIIRFLYST
TGALDIIGPDGTQVAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRH
VKDTIFTVGGGIRRGIPKVLVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELV
SIASKPSGRHVFFVDDLDAFKKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGL
VEGMYGHVSGVSMEPGTFNSFPCFRLHNNSLLAQPTKFIHPEGLPSDYTITMLFRLLPET
PKEPFALWEILNKDNEPLVGLILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFH
KLHMAISKTSAKAVIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGKKDSSAPFQLQSF
DIVCSTSWASRDKCCELPGLRKEEDCPAMPRACTCSQESKGPPGPTGPPGGPGIRGGRGD
RGEPGAVGPIGPVGDAGTPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGTPGIQGIP
GSPGSPGRAGQTGTRGLPGKDGPQGRTGPPGTIGTPGAPGSPGSSGPPGSLGNQGPPGPA
GNKGEKGERGDLQSQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTVPGPPGE
PGRQGGPGPQGEQGPPGRPGFPGSNGENGQPGARGLSGEKGDKGSPGTGVQGPRGPVGPP
GPTGQGRTGSQGPSGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGGNYGNPTP
QNLPLVQLPPNTYQNYDEVEEEDPYRYGEGGYPSEYYQPNYPAPRPVVPEDPALTQGDEV
LRSPGIHRSYRSLADKNDKKEEEGPGERKMVVP
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atggtacgaggagagcagttcatgtgtaagaccccggccatagcggatattgtgatcctg
gtggacggatcatggagtatcggacggataaacttccgtctggtccgcatgttcctggag
aatctggttagcgccttccatgtggagtttgacaagacacggataggtctggcccagtac
agtggtgaccccaggattgagtggcacctgaacactttcaccaccaaagaagcagtcatc
gacgctgtgaagaacctgccctacaaaggggggaacacactgacgggtcttgcattaacg
tacatcctggagaacagttataaacctgagtccggatcccgggccggcgttcccaaaatt
ggaatcctgatcacagatgggaagtctcaagacgatgtcaaacccccggctcagagtctg
agagaggcgggaatagagctgtttgccattggtgtgaagaacgccgatgagaaagagctg
aaggccatcggctcgcctccagaggagacgcatgtctacaacgtggccgacttcagcgcc
atgagctctatcgtggagcgtctgaccaggaccgtctgcgaccgggtcgaacagctcgac
aaggccatcaaaggtgagtccgattcaatcaccatggcctctcccagagacctggtgacc
tcagaggtgacagccaggagtttccgggtgtcgtggacccacgccccagggacggtggag
aagtatcgggtggtgtactaccctgccagcgggggccagcccgaggagaagatggtgcag
ggcacagtggacacggtggtgctcaactacctcctctccctgactgagtaccagatggcc
gtgttcgccatctacgccagctcagctagcgaggccctccgaggcagtgccaccacattg
gccctgcccatggtgaacaacctggagctgtttgacatcacccacaacaccatgagggcc
cgctggagggtcgcagagggggcttctggctacatgatcctctatgccccactgaccgag
ggaaacgacgccgatgagaaggaggtgaaagtggctgagaccgtgaacgaagtggaactg
gagaacctgaccccagacacagagtacacagtgaccgtgtacgccatgtacggagaggag
gccagtgatcctatgaccagtcaggagaccacgctacccctgaccccggcgcggaacctg
cgcttctccaacgtcgaccacagctcggccagactcacctgggaggcgacgtccaagaag
gccaacggttaccgcatcatgtacgtcaagaccaatggagtgcagaccaatgagatggac
gttggccgcatcaccaccctgttgctaaggaacctgacgtcattgaccgagtacacggtg
gccatctttgctatctatgacgagggccaggcagagcccttgactgacagcttcaccact
aagacggtcccagagcctctgaacctgaggagcagtgaagtctccacagagagcttcagg
atcacctgggaacactcagcccacgacgtggtcctttacagactcacatggacccccatc
agaggaggagacactaaagagatgctagtgaacggtaaaatgaatagccacctgctgact
ggactgaggcccatcactgagtacgaggtctctctgattgctgtcttcagaaacgaggaa
gaaagcaacgccgtgaccctcacagagtcaacagttgtgcgtctgggtgtgaggaaactc
ctgctcagcgatcacaccaccttcagcatggaggtgtcctgggagctgcaggaccgcaaa
gtgcgtcagtaccgcgtcgcctatgtcaccgccaggggcgatcgtgccgaggagacgaaa
atggtcccaggtggtcagaacagcctcctgctgcagccactgctgtctgacatggagtac
aaggtgacggtcaccccggtctacgccgacggagacggccccggtgtcagccgcatggga
cgcaccttgccactgtccgctcctaggaacctgagagtgtcggaggaatggtacaaccgc
ttccgtatcacctgggacacgcccccatcccccactatgggctatagggtcgtctacaac
cccatctctgctccgggacctgctttggagacctttgtgggcgaggacgtgaacaccatg
ctgatcctgaacctgatgagcggtactgagtacggcgttagggtcatcgcctcctacact
accggctccagcgagaccctcaccggcaaggccaggacattgtaccttggagtgaccaat
ctgaacacctaccaggtgaggatgaccagcgtgtgtgcccagtggggtgcccaccgccat
gccactctataccgtgtggtcatcgagtcgctgctcaatggatataagcaggaggcaagg
ctgggaggaggaaccacccggcactgcttcaatgacctgacagctaacacgcagtacaag
atcagtgtgtacgcccaactccaggacacagagggacctgcagtctccaccacagagaag
accttccctgttcccaccccggcacccaccagaccacccactacgaccgctcctcccagt
ataccctcagtcaaggaagtttgcaaggcggccaaggcagacctagcattcctagtggac
ggctcctggagcatcggggatgacaacttcctgaaaatcatccgcttcctgtacagcacc
acaggagccctcgacatcattggaccagatggtactcaggttgccattgtccagttcagt
gacgatgccagaaccgagttcaaacttaactcgtacgacaacaaggagaggctgctagag
gccattaaccgcatctcctataagggagggaacaccaagacagggctagccatccggcat
gtgaaagacaccatcttcacagtgggaggtggtatccggaggggcatccccaaagtgctg
gtggtgttgactgacgggcgctctcaggacgatgtcaacaaggtctccaaagagatgcag
atggaagggtacattgtttttgccattggttttgcggatgcggactacggggagctggtg
agcatcgccagcaagcctagcgggagacacgttttctttgtggatgatttagacgccttc
aagaaaattgaggaaaagctggtcacttttgtttgtgaggctgccactgccacttgtcct
tcggtggcgatgagtggcagtaccttgccaggtttcaggatgatggagatgtttggcctg
gtggagggtatgtatggacatgtatcaggagtgtccatggagcctggcaccttcaacagc
ttcccctgcttccgcctgcacaacaactccctccttgcccagcccaccaagtttatccac
cccgagggtttgccctccgattacaccatcactatgctgttccgcctgctgcctgaaacg
cccaaggagccctttgcattgtgggagatcctcaacaaggacaacgagcccctggtgggc
ctcattctggacaacggtggcaagaccctcaccttcttcaaccatgactacaaaggacag
tttcagactgtgaccttcgagggacctgagatcaagaagctcttctacggcagtttccac
aagctacacatggctattagcaagaccagcgccaaggctgtcattgactgtaagctagta
ggggagaaggccatcaacgcggcgggcaacatcaccacggatggcctggaggtgctggga
cgcatggtgcgctccagggggaagaaggacagctctgcaccgtttcaactgcagtcgttt
gacatcgtctgcagcacgtcctgggccagccgagacaagtgctgtgagcttcctggtttg
aggaaggaggaggactgtcctgccatgccccgtgcctgcacctgcagccaggaaagcaaa
ggtccccctggccccactggaccccctggaggacctgggatcagaggagggagaggggac
cgtggagaaccaggagctgtgggaccgataggtccagttggggacgctggtactcctggg
ctgcaggggcctcctggaccccaggggcccagcggacgtaccatcatgggccctccgggt
ggtccaggagaaagaggtgagaagggtgcagctggcactccaggaatacagggcattcct
gggtctcctgggtcaccaggtcgagcgggacaaacaggaacaaggggacttcctggtaaa
gatggaccccaggggcgaacaggacctccagggactataggcactccaggagctcctggg
tcaccagggtcaagtggacctccagggtcactgggaaaccagggacctcctggtcctgcc
ggaaacaaaggagagaagggagaaagaggtgacctgcaatcccaggcatcggtccaagca
atcgcccggcaggtctgtgagcagctgatacagagtcacatggctcgctacagctccatc
cttaaccacatccccagcgcacccgtctctgtccgcaccgttccaggtcccccaggagag
cccgggcggcagggcggcccaggaccacagggagagcaggggcccccgggcagaccaggg
ttccccgggtccaacggagaaaatggacaaccaggagccagaggtttgtcaggagagaag
ggcgacaagggaagcccaggcacaggagtccagggtcccagaggccctgtcggaccccca
ggaccaacgggtcagggccggacaggtagccagggtccatctggtcggccggggaaccct
ggaacacctgggcggccgggtatccctggaccagtggggtcggctggacctcctggatac
tgtgaccagaactcctgtgtgggctacaacgtaggaggtaattatggcaatcccactcca
caaaatcttcccttagtccaattgccccccaacacctaccagaactatgacgaggtggag
gaggaggacccctataggtatggcgaggggggctacccctccgagtactatcagcccaac
tacccggcgcctcgaccggtcgtgcccgaggacccagccctcacccagggcgacgaagtg
ctgaggtcccccgggatccaccgctcctacaggagcctggctgacaagaatgataagaaa
gaagaagaagggccgggggagaggaagatggtcgtcccatga
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integrated database retrieval system
