Salvelinus namaycush (lake trout): 120026927
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Entry
120026927 CDS
T07522
Name
(RefSeq) nuclear receptor subfamily 1 group D member 2-like isoform X1
KO
K08531
nuclear receptor subfamily 1 group D member 2
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120026927
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
snh03310
]
120026927
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
120026927
Nuclear receptors [BR:
snh03310
]
1. Thyroid hormone like
1D. Rev-Erb
120026927
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GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
120026927
NCBI-ProteinID:
XP_038827623
UniProt:
A0A8U0PM39
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Position
Sna32:17043438..17054639
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AA seq
629 aa
AA seq
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MSQEGKKGGVIAYISSSSPESCHSDSNDCSYNSSHSCRQGNVVNKPLNMAGLTLPLAHTI
AKTGRSTSTAKCDITKINGLVLLCKVCGDIASGFHYGVHACEGCKGFFRRSIQQNIQYKK
CLKNESCAIMRINRNRCQQCRFKKCLLVGMSKDSVRFGRIPKREKQRMLLEMQSAVNNMM
NNSQLHSQFHCNTPFPLANQLQSPACPVEPRPQYVDSGLGSVPSSTSPATSPGSNQSEET
SSDRDPAVAKNKSPSPNSVSPSSASDCGSEEVIGSVTRVHQETFMYNQEQGRPSPQSQAY
AQLTSPGAEQHVSDTGKRIDERNRNQQEAGDQQIKNQNHQNDLASFTATQAHYQAQERPT
NTGPQGPDSHHRQEDHCPYSRGRLPTSSPSGHCPYYAHHGLRGGNNSTSQATSNSHGGFS
ELLWNMGNRMHLLCPMNTSPHVNPHKSGHGIWEEFSHSFTPAVREVVEFAKRIPGFRDLS
QHDQVSLLKAGTFEVLVVRFASLFDVKDRTVTFLGGNKYSVETLQAMGAGDFLTSMMDFS
DKLMGLGLSEEEMSLFTAVVLISADRSGIENVNSVEALQETLIRHLRGLITKNHPNESGI
FTKLLLRLPDLRSLNNMHSEQLLAFKVHP
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaggaaggcaaaaaagggggtgtaatagcctacatcagctcctctagccctgag
tcatgtcatagtgactcaaatgactgcagctacaactcctcccacagctgtcgccagggc
aacgtagtgaacaagcccctaaacatggcaggcctcaccctcccgctggcccacactatc
gcaaagaccggacgctcgacctccactgcaaaatgcgacattactaaaatcaacggcctg
gtgctgctgtgtaaggtgtgcggagacattgcatctggattccactatggggttcatgcc
tgtgagggctgcaagggtttcttccgtcggagcatccagcagaacatccagtataagaag
tgcctgaagaacgagagctgtgccatcatgaggatcaacaggaaccgctgccagcagtgt
cgcttcaagaagtgtctgctggtcggcatgtccaaggactctgtgcgtttcggccgcatc
ccaaaacgtgagaagcagcgcatgctgctagagatgcagagtgccgtgaacaacatgatg
aacaacagccagctacacagccagttccactgcaacacacccttccccctggccaatcag
cttcagtcgccagcctgccccgtggagccccgcccccaatatgttgattctggcctaggc
tccgtaccctcctccacctctcccgccacttcccccgggtccaaccaatctgaggagacc
agctctgaccgcgaccctgcggtcgccaagaataaaagccccagccctaactccgtgtct
ccgtcgagtgcttcagactgtgggtcagaggaggtgattggctcggtgacccgggtccac
caggagaccttcatgtacaaccaggagcaaggtagaccctccccccagtcccaggcctac
gcccagctgacctccccgggggcggagcaacatgtcagtgacactggaaagaggatagac
gagaggaaccggaaccagcaggaggccggggaccagcagattaagaaccagaaccaccaa
aatgacctggcctcattcacagccactcaggcccattaccaggctcaggagaggcccacc
aacactgggcctcagggccctgacagccaccatcgccaggaggaccactgcccctacagc
agaggcagactgcccaccagctcccctagtggccactgcccatactacgcccaccatggc
ctgagaggaggcaacaacagcactagccaggccacctccaattcccatggaggattcagt
gaactactgtggaacatgggcaacaggatgcatctgctgtgtcccatgaacacgtctccc
catgtgaacccccataagtcaggccatgggatctgggaggagttcagccacagtttcacc
ccagctgtcagggaggtggtggaatttgccaagcggatcccaggcttcagagacctctcc
caacatgaccaggtcagcctgctcaaggctggtacctttgaggtgctagtggtgcgcttt
gcgtccctgtttgacgtgaaagaccgcacagtgacgtttctgggtggtaacaagtacagc
gtggagacgttacaagccatgggcgccggcgacttcctgacctccatgatggacttcagc
gacaagctgatggggctcggcctcagcgaggaggaaatgagcctgttcaccgctgtcgtc
ctcatctctgccgatcgctcagggattgagaacgtaaactctgtggaggctcttcaggag
actctgatccggcacctgaggggcctcatcactaagaaccaccctaacgagtcgggcata
ttcaccaagctgctcctcagactgcccgacctccgctccctcaataacatgcactctgag
cagctgctggccttcaaggtccatccctag
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