Salvelinus namaycush (lake trout): 120026928
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Entry
120026928 CDS
T07522
Name
(RefSeq) thyroid hormone receptor beta-like isoform X1
KO
K08362
thyroid hormone receptor beta
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04080
Neuroactive ligand-receptor interaction
snh04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
120026928
04081 Hormone signaling
120026928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120026928
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
snh03310
]
120026928
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
120026928
Nuclear receptors [BR:
snh03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
120026928
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Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
PAP_central
Motif
Other DBs
NCBI-GeneID:
120026928
NCBI-ProteinID:
XP_038827625
UniProt:
A0A8U0TTV5
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Position
32:complement(17061870..17169116)
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AA seq
416 aa
AA seq
DB search
MSEQGDKCTTPRWKHEALQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRT
IQKNLNPTYACKYEAKCIIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEE
NRERRRKEELQKTVWDRPEPSQEEWDLIRMVTEAHMSTNAQGNHWKQKRKFLVEEAMLLN
EITCNLFYTSDQSAVGVKETKPEDIGQAPVVNAPEGSKVDIEAFSQFTKIITPAITRVVD
FAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGG
LGVVSDAIFDLGLSLSSFHLDDSEVALLQAVILLSSDRPGLTSVERIERCQEEFLLAFEH
YINYRKHKVAQFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPPLFLEVFED
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcaaggagacaaatgcaccaccccccgctggaaacatgaggccttgcaaaat
gggtacatccctagttacctggacaaggacgagttatgtgtggtatgtggggacaaagct
acaggatatcactatcgctgtatcacctgtgaaggatgcaagggtttcttccggcggacg
atccagaagaacctgaacccaacgtacgcatgtaagtacgaggcgaagtgcatcatcgat
aaggtgaccaggaaccagtgccaggaatgtcgcttcaagaagtgcatcgctgtcggcatg
gcaacagacttggtgctggatgacagcaagcggctcgccaagcggaagttgatcgaggag
aaccgtgagcggcggcggaaggaggagctccagaagacggtgtgggaccggcctgagccg
tcccaggaggagtgggacctgatccgcatggtcaccgaggcccacatgtcaactaacgcc
cagggaaaccactggaaacagaaacgcaagttcttggtcgaggaagcaatgctacttaat
gaaataacatgtaatttattctatacttctgaccagagtgcagtgggggtgaaggaaacc
aagcccgaggacattggtcaagcgccggtcgtaaatgcacctgaagggagcaaagtggac
atagaagccttcagtcagtttacaaaaattatcacccccgccattacccgagtggtggac
tttgccaaaaagctgcctatgttctgtgagctgccttgtgaagaccagattatcctattg
aaaggctgctgcatggagatcatgtctttacgggcggccgttcgctacgaccccgagagt
gagacgctgacgcttaacggagagatggccgtgacccgcggccagctgaagaacggaggc
ctgggtgtggtgtcggacgctatctttgatttgggcttatcgctgtcttcgttccacctg
gacgactctgaggtcgctctgctacaggccgtcatcctcctgtcctccgaccgtccgggg
ctgaccagcgtggagcgtattgagcgctgtcaggaggagttccttctggcctttgaacat
tacatcaactaccgcaaacacaaggtggcgcaattctggcccaagctgctgatgaaggtg
acggacctgcggatgatcggggcgtgccacgcctcccgcttcctgcatatgaaggtggag
tgccccaacgaacttttccccccactcttcctagaggtctttgaggactga
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