Salvelinus namaycush (lake trout): 120026950
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Entry
120026950 CDS
T07522
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120026950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120026950
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120026950
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120026950
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120026950
NCBI-ProteinID:
XP_038827661
UniProt:
A0A8U0PNF1
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Position
Sna32:complement(7698022..7716684)
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AA seq
951 aa
AA seq
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MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKCFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPPSPATYTTENSED
DKKRGRSTDSEVGQLCCTRSGFEVMPFITFQSPVKNGNPSSSLSSSSSSSSSSSSSASSG
ASSSSLATIAGGCLPVTGGNSLLGNMGGLLSNSGSYRDATQQQQLQQHYQTQQARNSVIS
SNTPSNSNPSNNILLPSPSASSSANSSTTLPPLTPNTQLHAPSRPSPSSSLGLGLGLGLG
KGGITGSPAVSQMSGLGLSGMPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKSGC
SSSPNSSTVGPVGGNTVGDRSTGLLGSAPGAIGVSGGILSLSGLGSGQLAVQGLPLVAPS
PIGGLSPGSSLGAIGSIGGNSGSGSSSSVGMGGGSSSITRPPSGQKQNGSTSYSAVVADS
TPDSALNSASQLQSSQPSSLTSTTNQPKDSGPSLLGPMTLPTSSPSPSYSESKLPGSGML
NGPLSYTQTSESKPQEPLSTLKSMAERAALGSGMEGEMLPLHLTTDIFPSATLPPGPPSA
PQQPSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNP
CPTLPFHHQVPPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKY
MMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaggtaacagaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaacgctaaccag
aaggagaagtatgaagccgacctcaagaaagagattaaaaaactacagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagattaaagacaaaaggcagctagtggagaat
cgcaaactgattgagacgcaaatggagcggttcaagatcgtggagcgagagaccaagacg
aaggcgtactcgaaagaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaagaggaggtcggcaattggctaacgaatacaatagacactctgaacatgcaggtggac
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggcgacaaa
gagaaacaggaccgcatcgaagagctgaagtgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggagctccctacctctccctctgtc
tccccccatccatctcttgtctctctagccgggtcgctggtggccacgtccccgccgggc
caatcgctcctggacgatgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccatccctccctcgcccgcaacttacactacggagaactctgaagat
gacaagaaaaggggacgttcgacagacagtgaagtcggtcagctgtgctgcaccaggagt
ggttttgaagtaatgccttttataacatttcagtcgcctgtcaagaacggcaacccctct
tcgtcgttgtcctcctcctcctcttcatcctcctcctcttcatcctctgcctcctcggga
gcctcctcatcctcgctggcgaccatcgccgggggttgcctgcctgtcactgggggcaac
agccttctgggcaacatggggggtctcctctccaactctggcagctacagagacgctacc
cagcagcagcagctgcagcagcattaccaaacccagcaggccagaaactcagtcatctcc
tccaacacaccctccaactccaacccgtcgaacaacatcctcctccccagcccctccgct
tcctcatccgccaactctagcacgaccctccccccactcacgcccaacacccagttgcat
gctccgtcaaggccttcaccgtcctccagcttggggctcgggttgggcttgggccttggt
aaaggcggcattacggggtcaccggccgtcagccagatgtcgggccttggcttgtcgggg
atgccggcatccctaaacaccatggccgggctcctggcgggctcaacttcggccccctac
gccacagcagcagcaggctccggaaccatcggaagccccctagcagggaaaagcggctgc
agtagcagccctaactccagcacagtgggaccggtgggcgggaacactgtcggcgacaga
tccacgggcctgttgggctctgcgcccggtgcaattggtgtcagcggtgggatcctcagc
ctaagcggccttggctcagggcagttggcggtccagggccttcccctggtggcccccagt
cccataggaggcctgtcccctggaagcagcctgggagccataggaagcattggagggaac
tctggttcaggttcaagcagtagcgtgggcatgggaggaggaagctcgtcgatcacaagg
ccacccagtggacagaagcagaatggtagcactagttacagtgctgtagtagcagacagc
acacccgattccgccctcaacagtgccagccaattacaaagcagccaaccctcgtctttg
acctccaccaccaatcagcctaaagacagtggccccagcctcttagggcccatgactctt
cccaccagctctccctcgccctcctacagcgagagtaaacttccaggcagcggtatgctc
aacgggccactctcctacacacagacctctgaaagcaagccccaggagcctctgagcact
ctaaagtctatggcagaacgagcggcactgggctcaggaatggagggagagatgctccct
ctgcacctcaccacagacattttccccagcgctacattgcccccggggcctccctcggcc
ccccagcagccctcgctttcagaggtcagcatccccccatcgctgggcgtgtgcccactc
gggcctgtgcccctgtccaaagaccagctgtaccagcaggccatgcaggaatcggcatgg
acgcacatgcctcacccctccgactcggagaggatcaggcagtacctgatgaggaaccca
tgtcccaccctgcctttccaccaccaggtgccacccccccactccgactctgtagagttc
taccagagactgtccacagagacactgttcttcatcttctactacctagagggcactaag
gcccagtatctggcagccaaggccttgaagaagcagtcgtggcggttccacaccaagtac
atgatgtggttccagaggcacgaggagcccaagaccatcacagatgagtttgagcagggg
acgtacatttactttgactacgagaagtggggacaacggaagaaggagggattcacgttt
gagtacaggtaccttgaggaccgagacctccagtga
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