Salvelinus namaycush (lake trout): 120027062
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Entry
120027062 CDS
T07522
Symbol
scrt1a
Name
(RefSeq) transcriptional repressor scratch 1a
KO
K09219
scratch
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120027062 (scrt1a)
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys2His2 Snail
120027062 (scrt1a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
zf-C2H2_6
C2CH-3rd_BIRD-IDD
zf-C2H2_jaz
zf-met
Rpr2
DUF7479
zf-BED
zf-C2H2_15
zf-C2H2_11
DUF7351
zf-C2H2_16
Gmx_para_CXXCG
HypA
C1_4
Motif
Other DBs
NCBI-GeneID:
120027062
NCBI-ProteinID:
XP_038827834
UniProt:
A0A8U0TU85
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All DBs
Position
Sna32:complement(23463118..23465029)
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AA seq
284 aa
AA seq
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MPRSFLVKKVKLDDFSSADLDNHYGRVRSDLSLRFHEKGYISDYMTPSVYDGESDNGIKV
PSPSPIYDGIHSDGIHSDYGAPDSDQPDSPQSEISSGYINGDTAVSEGYTVDAFFITDGR
SRRKAISSPRTIQRHTCNECGKTYATSSNLSRHKQTHRSLESKMAKKCPTCGKVYVSMPA
MAMHLLTHDLKHKCDICSKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQ
THSAFKHYKCKRCDKTFALKSYLNKHYESACFKGEFSPISSIDD
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgccaagatcttttctggtcaaaaaggttaagctcgatgatttttcatctgctgatctg
gataaccattatggtagagtgaggtccgacctcagcctccgctttcatgaaaaagggtac
atcagtgactacatgaccccgtctgtctatgacggtgaaagtgacaatggcattaaagtc
ccctctcccagccccatctatgatggcatccacagcgacggcatccacagcgactacgga
gcaccggactcggaccagcctgacagtccccagtccgagatctcctccgggtacatcaac
ggggacaccgccgtaagcgagggctacaccgtagacgccttcttcatcacggacggaagg
tcgaggagaaaagccatcagcagccccaggaccatacagcgtcacacgtgcaacgagtgc
ggaaaaacgtacgccacgtcctccaacttgagccggcacaagcagacccaccgtagccta
gagagcaagatggccaagaagtgcccgacctgtgggaaggtgtacgtgtcaatgcccgcc
atggccatgcatctgctcacccacgacctcaagcacaagtgtgatatatgtagcaaggcc
ttcagtagaccttggctgctgcagggacacatgcggtcacacaccggcgagaagcccttt
ggatgcgcacactgcggaaaggcgttcgccgaccgctccaacctccgcgctcacatgcag
acgcactctgctttcaagcactacaagtgcaagagatgcgacaagacctttgctttaaag
tcctacctgaacaagcactacgagtccgcctgctttaagggagagttctcacctataagc
tccattgacgactga
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