Salvelinus namaycush (lake trout): 120027104
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Entry
120027104 CDS
T07522
Name
(RefSeq) syndecan-3-like
KO
K16337
syndecan 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04514
Cell adhesion molecules
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120027104
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120027104
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
snh00535
]
120027104
Proteoglycans [BR:
snh00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
120027104
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Motif
Pfam:
Syndecan
TGF_beta_GS
eIF-3_zeta
Motif
Other DBs
NCBI-GeneID:
120027104
NCBI-ProteinID:
XP_038827870
UniProt:
A0A8U0TTX4
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Position
Sna32:33401330..33466738
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AA seq
434 aa
AA seq
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MKLPPCFMALIAALLAHSALGQAWVPSIDEESSSRDEFYDDEDLFSGSGSGFPEMKVNPT
AVGVSLPTEAPLPFSTTQATGPAPSAPPVAEPSPKLDILPTPLPTEGEGESGVEWEREQE
REREQEKEREQEKEREQEERERERERERERERERERERERIRELEREQERDKAAQTTISP
RSPAALPMATTSLATPSAESAAPSSGVEDLGTTEEEDEDVYLSPDPTTSLLMETTTEEEV
TTTATETETTPIPETTAPHTTTGPAPTERSSSAPFRPRVPVTLPTKAAPTEKSTRPQLPS
TTNNELGVNGPSGDFEIREEDHRQGNEVVGRGVETGAEPDLIGNTINTGSSAAQLPQKNI
LERKEVLIAVIVGGVVGALFAAFLVMLLVYRMKKKDEGSYTLEEPKQATVTYQNPDKQAT
VTYQNPDKQEEFYA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgccgccttgtttcatggcgctcatcgcggcgctgctcgctcactccgcgctg
ggtcaggcctgggttccgtctatagatgaagaaagttcttccagagatgagttctatgat
gatgaagacctcttctcaggctccggatctggctttccagagatgaaggtcaaccctaca
gcggtgggcgtatctttacctacggaagcgcccctccccttctccaccacccaggccact
ggccccgccccctcggccccacctgtagccgagcccagccctaaacttgacatccttcct
accccactacccactgagggagaaggggagagcggggtagagtgggagagagaacaagag
agggagagggaacaagagaaggagagggaacaagagaaggagagggaacaagaggagagg
gagagggaacgagagagggagagagaacgagagagggagagagaacgagaaagagagagg
atacgggaattagagagggaacaagaaagagacaaggccgcccagactaccatctccccc
cgcagccctgcagctcttcccatggcaaccaccagtttggcgactccttcggcggagagc
gcagcaccctctagcggcgtggaagacctgggcaccacagaagaagaggacgaggatgtt
tacctgtccccagaccccaccaccagtttacttatggagaccaccacagaagaagaagtg
accactactgccacagagacagagaccacacccatcccagagacaacagctccacacact
acgactggcccagccccaactgagaggtctagctctgcccccttcaggcccagggttcct
gtgaccttgcctactaaagctgcacccacagagaagagcacacgtccccagctaccctct
acgacgaataatgagttgggggttaacggacccagcggagactttgagatccgtgaggag
gaccatcgccagggcaacgaggttgttgggcgtggcgtggagacgggagcggagcctgat
ctaattggcaacacgatcaacacgggaagttctgccgctcaacttccacagaagaacatc
ctggagaggaaggaggtcctgatagcggtgatagtggggggcgtggtgggggctctgttc
gcagcgttcctggtcatgctgctggtgtacaggatgaagaagaaagatgagggaagctac
acgctggaggaacccaaacaggctaccgtcacctaccagaaccctgacaaacaggctacc
gtcacctaccagaaccctgacaaacaggaggagttctatgcatga
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