KEGG   Salvelinus namaycush (lake trout): 120027218
Entry
120027218         CDS       T07522                                 
Name
(RefSeq) collagen alpha-2(IX) chain-like
  KO
K08131  collagen type IX alpha
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh04510  Focal adhesion
snh04512  ECM-receptor interaction
snh04518  Integrin signaling
snh04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:snh00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    120027218
   04518 Integrin signaling
    120027218
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    120027218
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    120027218
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:snh00535]
    120027218
Proteoglycans [BR:snh00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   120027218
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 120027218
NCBI-ProteinID: XP_038828040
UniProt: A0A8U0PNL3
LinkDB
Position
32:28253588..28295489
AA seq 691 aa
MSGLSAVLKSWVILQTLCLALAQVNGPPGPQGNPGPPGPSGTPGSDGIDGEKGPPGPPGP
LGLKGDPGEPGPDGPPGDNGIDGLMGPKGDGGPIGNPGPKGQPGPGGEPGPTGPGLPGLA
GAPGPIGLPGEIGQTGPTGILGAPGPPGIPGPPGKPGPPGKFLGGEEGSADFQCPINCPA
GPKGPQGLQGVKGHKGRAGVLGEPGSIGKLGTKGEVGISGEQGIPGPPGPMGLRGYPGMM
GPKAEAGPRGYKGINGPVGQPGPPGEEGPQGPPGEAGEKGDLGGRGIKGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGAPGHAGKPGGPGHQGTAGLPGSPGTKGGPGGKGEPGPRGHV
GMSGAPGPQGEPGLPGEAGMEGVPGPKGDRGQRGAVGPQGIVGKAGNKGMRGPMGVPGAQ
GISGTKGDKGFQGKVGAKGDFGDPGVEGLAGEKGEKGLGGEPGPKGQQGVRGETGFNGPT
GDSGKPGDQGPGGLPGPRGLNGERGVPGMPGIVGAAGRDASDQHIIEVVLKMLQERLAAV
AVSAKRVVLGGAGVMGPPGPPGPPGAPGAQGPHGLTGARGIPGMFGASGQIGNTGLKGKR
GAKGDRGYPGKPHAGQPGPPGIPGPPGIDGVARNGKPGERGPQGSAGEAGRPGKAGPTGL
PGFCEAAACLAASAYTSPRLQDSARVKGPGV
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgtctggactctcggcagtgttgaagagctgggtcatcctgcagactctgtgcctggct
ctggcccaagtgaacggtcctccaggacctcaaggcaatcccggtccgcccggcccctct
ggcacccccgggtccgatggcattgatggggaaaaaggacctcctggacctcctggccca
ctagggttgaagggggacccaggtgagcctggtccagatggacctcccggagacaacggc
atcgacggtttgatgggaccaaagggagacggcggccctatcgggaaccctggacctaaa
ggccagcctggacctggtggtgaacctggacccactggacccggactgcctggactggct
ggagccccaggcccaatcggccttcccggtgagattggacagactggacctacgggcata
ttgggagcacctggacctccaggaattccaggacccccaggaaaaccaggtcctccaggg
aagttcttgggaggagaggagggcagtgcagacttccagtgtccaatcaactgcccagca
gggcctaagggtccccagggactgcagggggtcaagggacacaaaggtcgtgctggtgtg
ctgggagagcctggcagcattgggaaactgggtacgaagggagaggtcggcatctctggt
gagcagggaatcccaggacccccgggtcctatgggattgaggggttacccaggaatgatg
ggccccaaggcagaggcgggccctcgtggttacaagggcatcaatggaccagttggccaa
cctggacccccaggtgaggagggacctcagggaccacctggagaggctggggagaaagga
gacttaggtggtcgaggtatcaagggcccacaaggagctgttggcaagaagggagagaat
ggtctgcctggtatcgacggaaaggatggcactcctggcatccctggaatcaagggtgcc
ccagggcatgctgggaagcctggtggtcctggtcaccagggaacagcaggtttgcctggc
agccccggaaccaagggtggacctggaggcaagggagagcctggtcccagaggtcatgtt
ggaatgtctggtgccccaggacctcagggtgagcctggtcttcctggtgaagctggtatg
gagggcgttcctggacctaagggtgacagaggccagaggggagctgtagggccacagggt
attgttggcaaggctggcaacaagggtatgagagggcctatgggcgtcccaggggctcaa
ggcatctcaggaaccaagggagacaagggattccaaggaaaagttggggcgaagggagac
tttggtgatcctggtgtagaaggcttggctggggagaaaggagagaagggtttgggtggt
gagcctggacccaaaggacagcaaggagtgaggggagagacagggttcaatggccccaca
ggagactcaggcaaaccaggagaccagggaccaggaggactgcctgggcctcgcggcctc
aatggggagagaggagtaccaggcatgccaggcattgtgggggcagcaggacgggatgca
tcagaccagcacatcattgaggtggttctgaagatgctgcaagagcgtctggcggctgta
gcggtgagcgctaagcgtgtcgtactgggtggagccggtgtcatgggtccccctggtcct
cctggacccccaggagctcccggtgctcagggcccacacggcctcaccggcgcccgcggc
atccctggcatgtttggagcctccggacagatcggcaacaccggactgaaaggaaagaga
ggagcgaagggagacagaggatatcctggtaaaccacatgctggccagccaggacccccg
gggataccaggtccccctggtattgacggagtggctcgaaatggtaagcctggtgagcga
ggcccccagggctcggcaggagaggctggtcgtcctggtaaggcgggccccactggtctt
ccagggttctgtgaggctgcagcctgcctagctgcctcggcctacacctcccccagacta
caggactccgccagggtcaagggcccaggagtctaa

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