Salvelinus namaycush (lake trout): 120027478 Help Entry 120027478         CDS       T07522                                  Name (RefSeq) helicase SKI2W-like   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism snh  Salvelinus namaycush (lake trout) Pathway snh03018   RNA degradation Brite KEGG Orthology (KO) [BR:snh00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     120027478  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:snh03019]     120027478 Enzymes [BR:snh01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      120027478 Messenger RNA biogenesis [BR:snh03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      120027478   mRNA degradation factors    3'-5' decay     Ski complex      120027478 SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel Helicase_C DEXQc_Suv3 ResIII MTR4-like_stalk HTH_23 DUF3516 Motif Other DBs NCBI-GeneID:  120027478 NCBI-ProteinID:  XP_038828352 UniProt:  A0A8U0PQ94 LinkDB All DBs Position 32:complement(4593351..4627379) Genome browser AA seq 1250 aa AA seqDB search MERIDLPAVGPTDLPISLLEMGCSGRFELITHPQPNDQPLPPQSSLPHGLPPTSVSLETE VEKRFLRDPAWLPIHDTDAAFHRFLKLAERDVHIDSLLHCALSPLHSGISVVRDPTTGML LDFTEVLLGDTGISAKNSMSLQRPPNPNPSESLRGSNTNYPFLPGGMEELTLEQIKKKSE REEDIDFENGLLTVPPGLKVGMDFIDKDAKTTKGEINLLSLLSTFDDIIDSQPEAEEKEK GHGSGNAPKLPRTNSLEDLGIKDSPSTPGTTSTEKKDGGTTKPAEGQEEKKRWAIPINIT SPCGDFYKRIPNPAFKYPFELDVFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYAIALSQ KHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPEASCLIMTTEILRSMLYNG SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWVGRI KKKHIYVISTAKRPVPLEHYLYTGNSTKTQKEMFLLLDPSGNFQTKGYYAAIDAKKERTS KHAQSFGTKNSSQNTTPNQDRAVWLSLLHFLSQRQQTPVVAFTFSRTRCDDNARSLTSMD LTSSVEKSEIHSFFQKSLRRLRGGDRQLPQILLIRDLLKRGIGVHHSGILPIMKEVIEML FSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLD DTGTVIILCKSGVHDMGDLNVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSF SESHRDTQAHEQQIGQLKQTLSSLPPLDTEGQLSDLLPYYYTVTELRLTAEALQCAVLGS VNGLKALSVGRVVVVNNKQHFNALGVILQVSSDSVNRTFTALIICEKGNEEGGGDSPNGS AFPHLYNTALFTPEGPCSHTVQKLKLQDVSAITVKTLKVIPDRIIDNYNKRQQLRFRLDP PGQAISTATQELLRLAEANPGGAMALDPVNDFQLKSVDVVEGTMRLRVLQDSLKDFSCIH SPTFSEQFLRVQERICVQEELDKLLFLISDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQL KGRVACQISSHELLLTELLFENALSPLAPEESAALLSCLVFQQKTQVEPHISNTLKEGIE RVLAVAQRIGELQRDCGITQTVEEFVSQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTV VRCIQRLDEVLKEVRQAARIVGDSVLGSKMEKASLVIRRDIVFTASLYTH NT seq 3753 nt NT seq  +upstreamnt  +downstreamnt atggaaagaatagatctgcccgctgtgggccccacagacctccctatatccctgctggag atgggttgctctggcaggtttgagctcatcacacacccacagcccaatgaccagcccctg cctccacaaagttcgctccctcatggactccctcccactagtgtgagcctggagacagag gtagagaagcgctttctacgcgaccctgcctggcttcccatacacgataccgacgctgcc ttccacaggtttctgaagctggctgagagagatgttcatatagactctcttctccattgt gctctgtctcctctgcactctggcatctcagtagtcagagatccaacaacaggaatgttg ttggacttcactgaggtgttactgggggacacaggcatctctgctaagaattctatgtcc ctgcaacgtccaccaaaccctaatccctctgagagcctacgaggaagcaacaccaactac ccatttttgcccggtggtatggaggagctgacactggaacaaatcaagaagaaatccgag cgggaggaggacatagactttgagaatgggttactcacagtgccccctggcctgaaagtt gggatggacttcattgacaaagatgccaaaaccacaaagggagaaatcaatctcctgtcc ctcctgtccacctttgatgacatcatagactcccagcctgaggcagaggagaaggagaaa ggccacggaagtggaaacgcacccaaactgcccagaaccaacagcctggaagacctgggg atcaaggactctccctctacacctgggaccacctctacagagaagaaagatggaggaacg accaaaccagcagagggccaggaggagaagaagagatgggcaatcccaataaacatcacc tccccctgcggtgacttctacaaacgtatccctaaccctgccttcaagtatccctttgag ttggacgtgttccagaagcaggcagtgttgaggctggaggcccacgagtctgtgtttgtg gcagctcacacatcagcaggcaaaaccgtggtggcagaatacgccatagcactctcacag aagcacatgaccaggaccatttacacctcccccatcaaggcgctgtccaatcagaagttc cgggacttcaagaccacctttggggacgtggggcttctgaccggcgacgtacagctgagt cctgaagcctcctgtctcatcatgaccactgagatattgaggtccatgctctataacggt tcggaggtcatcagagatttagagtgggtgatctttgacgaggttcactacatcaatgat gctgagagaggagtggtgtgggaggaggttctgatcatgttacccgaccatgtcagcatt attcttctgagtgccactgtccccaacgctgtggagttcagtgagtgggtcggacgcatt aaaaagaagcacatctatgtgatcagcacagcgaagagacctgtgcctctggagcactac ctgtacacaggcaacagcaccaagacccagaaggagatgttcctactgctggacccttcg ggcaacttccaaaccaaagggtactatgctgctatagatgccaaaaaggaacgtaccagt aaacacgcacagtcctttgggacgaaaaattcatctcagaacactacacctaatcaggac cgggcggtgtggctttccctcctccacttcctgtcccagcgccagcagacccccgtggtg gcgttcaccttctccaggacgcgctgcgacgacaacgcccgctctctaacctccatggac ctcaccagctcggtggagaagagcgagatccactccttcttccagaagagcctgagacgc ctcaggggaggggaccgccagctgccccagatcctgttgattagggacctactgaagagg ggtatcggtgtgcatcacagtggcatcctgccaatcatgaaggaggtcattgagatgctg ttctcgcgggggctagtaaaggttctgtttgccactgagacgtttgctatgggagtgaac atgcctgcgaggacagtagtgtttgacagcatacggaaacacgatggcaccggcttcaga aacctgctgcctggtgagtatatccagatggctggtagagcgggtaggagaggtctggac gacacaggcactgtcatcatcctctgcaagtcaggggtacatgacatgggggacctaaat gtcatgatgctggggaagcccacagtgctgcagtcccagttcaggctgacctacaccatg atcctcaacctgctccgtgtggaagccctccgagtcaccgacatgatgaggaggagcttc tctgagagccacagagacacacaggcccatgagcagcagattggtcagttgaaacagacc ctgtcctctctccctcctctggacacggagggtcagctgtctgacctactgccgtactac tacactgtcactgagctacgcctcaccgctgaggcgctgcagtgtgctgttctggggtct gtgaatgggttgaaagctctttccgtgggacgagtggtagtggtcaacaacaaacagcac ttcaacgccctcggagtcatcctacaggtttccagtgactcagtgaatcgtacgtttact gctctcatcatctgtgagaaaggcaatgaggagggaggaggggacagccccaacggcagt gccttcccccacctctacaacactgccctctttacacctgaaggtccctgcagtcacacg gtccagaagctgaagctacaggacgtctcagccatcacagtcaagaccctgaaggtgatc cctgaccgaatcatcgacaactacaacaagaggcagcagcttcgcttcaggcttgatcct ccgggtcaagccatctccacggcaacccaggaactcctccgattggcggaggccaaccca ggcggggcgatggcccttgacccagtgaacgacttccagctgaagagtgtggatgtggtg gagggcaccatgaggctgcgtgtgctgcaggacagcctcaaagacttcagctgcatccac tcacccaccttctcagaacagtttctgcgggtgcaggagagaatttgtgttcaggaggag ctggacaaactgctcttcctcatctcagaccagtccctgtctctactgccagagtaccac cagagaatcaaggtgctccaatccctgcagtacgtggacagtagtggtgcggtgcagctg aagggcagggtggcctgccagatcagtagccatgagctgcttctcacagagctactgttt gagaacgccctgagccccctggcccctgaggagagcgccgccctactgtcctgtctggtc tttcaacagaagacccaggtggagcctcacatcagcaacacactgaaggagggtattgag agagtgctggcggtggcccagcgtattggggagctgcagagggactgtgggataacccag acagtggaagaatttgtgagccagttcaagtttggcctgaccgaggtggtctactgctgg gccagaggcatgccgtttgcagagattgcccagttaacagacgtccaggagggtacggtg gtgcgctgcatccagagactagacgaggtgctgaaggaggtgcgccaggcggcccgcatc gtgggagactcggtcctgggcagcaagatggagaaagcctccctggtcatccgcagagac atcgtgttcaccgcctcactctacacacactga

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