Salvelinus namaycush (lake trout): 120027498
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Entry
120027498 CDS
T07522
Name
(RefSeq) collagen alpha-2(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
snh
Salvelinus namaycush (lake trout)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
Motif
Other DBs
NCBI-GeneID:
120027498
NCBI-ProteinID:
XP_038828377
UniProt:
A0A8U0PNX9
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Position
Sna32:complement(30247217..30261302)
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AA seq
685 aa
AA seq
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MLLAPVCVLLLLGGRVLGGGYPPMPQMKYMQPMMKGPVGPPFREGKGQYLDMPPMMDVKG
EPGPQGKPGPRGPTGPSGLPGKPGLGKPGLNGQPGLQGPPGFPGIGKPGLPGLPGKGGIK
GMPGNNGEVGLRGEPGPRGLPGQPGLPGPAGLSLNGKPGLPGGRGQPGSRGEPGQKGGPG
NPGERGLKGENGNGNPGLPGTRGPNGLRGPPGPAGNQGMGKPGLDGLPGPSGPKGDQGLP
GGIGEPGKAGGPGLQGQPGSVGLGKPGNDGLPGGPGPLGPKGEPGQRGSSGFPGGPGYGK
PGLPGTKGDKGLFGGPGVPGNKGEPGMAGQPGDMGPDGQPGPPGIQGPMGLSGKHGMPGL
KGELGPQGHPGLPGIRGDQGPGGMSGKPGISGDKGLPGPNGAIGKPGPKGEAGHIGLPGN
PGLLGNPGPKGELGFVGSPGPRGQSGIPGLQGPSGPMGPQGIPGLKGEPGLPGFPGLGKL
GEKGVPGPQGPPGKPGNSGLNGNPGPPGPPGPPGPAGNGQTGVAGLTDSGLGGDEVPDGR
NGKPQFGRADLSATMSPAFTAILTTAFPPSGMPIKFDRTLYNGQNAYNPATGIFTSPMSG
VYYFAYHVHVKGFSLWVALYKNYVPATYTYDEYKKGYMDQASGSAVLELKENDQVWMQMP
SDQANGLYSTEYIHSSFSGFLLCPT
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgctgttggctcctgtctgtgtgctgctgctgctggggggccgtgtccttggaggaggc
tacccccccatgccccagatgaagtacatgcagcccatgatgaagggccctgtgggacct
cccttccgagagggcaagggacagtacctcgacatgccacccatgatggacgtaaagggc
gagccagggccccaaggaaaacctggacctagaggcccaactgggccctcaggacttccg
ggaaaaccaggactggggaaaccaggtctcaatggccagcctggccttcaggggcctcca
ggctttccgggcattgggaagccaggacttccgggtctcccaggaaaggggggaattaag
gggatgcctgggaataatggcgaggttggactccggggtgaaccaggtcccagaggactt
ccaggtcaaccaggtctccctgggccagctggcctgtctcttaatggcaaacctggcctt
cccggtgggaggggccaacctgggtctcgtggagaaccaggacagaaaggtgggcctgga
aatcctggggagcgtggactcaagggagagaatggcaatgggaatcctggattgccagga
accaggggccccaatgggctcaggggccccccagggccagctggtaatcagggcatggga
aaaccaggacttgacgggcttcctggtccttctgggcctaaaggggaccaggggctccca
ggaggaataggagagccagggaaggctggcggtccagggctgcaaggccaaccaggatcc
gtcggattgggcaagcctggtaatgatggattgcctggagggcccggtccacttgggcct
aaaggtgagccaggacagaggggttcttcagggtttcctggaggtcctggctacggcaaa
cctggtctaccagggacaaagggagacaagggccttttcgggggaccaggcgtccctgga
aataagggagagcctgggatggcgggacagccaggagacatgggcccagatggacagcca
ggaccaccaggaatacagggccccatggggctttcaggaaaacacggcatgcccggcctg
aagggagagttgggtccacaggggcatccaggtctgccagggatcagaggggaccagggt
cccggtggtatgtctggaaaaccaggcatttctggagacaaagggctcccgggccctaac
ggggctatcggaaaacctgggcccaaaggcgaggcagggcacataggcctgccaggaaac
ccaggtcttttaggcaatcctggaccaaaaggggagcttgggtttgttgggtctccagga
ccaagaggccagtctggaatccccggtctgcaggggccttcagggccaatggggccacag
ggtatcccaggtctgaagggcgaacctgggctgccgggttttcctggtctgggcaagctc
ggagaaaaaggagttccaggtccccaaggtcccccaggaaagccaggcaactctggactc
aacggcaaccccggccctccagggccacccgggccccctggccctgcaggaaacggacaa
accggggtggctgggctaacggattcagggctgggtggggacgaggtaccagacgggagg
aacggaaaaccacagtttggccgtgcagatctctccgccaccatgtcacccgcgtttacc
gccatcctcaccacagccttccctccctctgggatgcccatcaagttcgacaggaccctt
tacaacggacagaatgcctacaaccctgccaccggtatcttcaccagccccatgtctggc
gtctactactttgcctaccacgtgcacgtaaagggattcagtctgtgggtggcgctgtac
aagaactatgttccagccacatacacctacgacgagtacaagaagggctacatggaccag
gcgtccggtagtgccgtccttgagttgaaggagaatgaccaggtgtggatgcagatgccc
tcggatcaggctaacgggctctactccaccgaatacatccactcgtccttctcagggttc
ctgctctgtcccacataa
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