Salvelinus namaycush (lake trout): 120027525
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Entry
120027525 CDS
T07522
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120027525
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120027525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
120027525
NCBI-ProteinID:
XP_038828418
UniProt:
A0A8U0PNN0
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All DBs
Position
Sna32:complement(8197536..8232037)
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AA seq
2563 aa
AA seq
DB search
MKPIKKQGRRSPPSTRAKGGKRRGAVDSGEKRDSDENRDRSPKSQTSPQTSSHSESSQEE
SVTLTARATPEREVHREGPRLPETAAAAAGSLPGKSEDSRPESVKSLSAHSTDSSSSAAS
AANSPNPSSNRKTATFKARVPKKKYTSEHCAAAAVAANNHRYHGNPGTPPLNSSSAHCGS
NTGSQSSGLSSGPGSTASEGGSLTDINSQTRRPVEDYITTIAPPQDRDNTPGPPPTGDRV
RRGPEGGREISPSPVRCSSTDTASEHDPDVSEPRRANFPHTNPNTEAHTLDLVQRSTPRT
PTPQSLSDALADALAKGLKNQRVLARQARRRTGKGEEENGRGGGREDMDSVFRAGVVRRV
SGEHGSLEVQLNGEKELYRYPFREGPQGPVDIIMDAPPPGSQAVPIGTPVCVPFGGNEDG
GTTEAQRQWYREGLVTQVDSHPAVSYPYRVLLEDRAPPGDEEGDGRVGTPTAVWVSRQSL
RLLVPPWDLDLGPSGGGREDAAAERGREREREDRDEIEVEQELCFLSHGMGLSAAVAGSV
LGRLSYPGTAPASSSSSTVSSPVTPASVLSLVAGRDWEREKDLVERERELQRKQERDNRE
RAKQHHHFMPLTPEEDIEVSHFSMVPMGVAGGAAKALAVSQHRHILSKPPPGYLSPHLSV
VRGLGGTPLVGPHLALNPHPPASPTVLMGLESGALAAGAGVIATPQLPPLLSSSSRGSLD
KPPSSNANSHGASGGGGGSGSASSSRSRTPLTAAQQKYKKGDVVCTPTGIRKKFNGKQWR
RLCSREGCSKESQRRGYCSRHLSMRTKEMEASGGGRDRGGASSTGTLTPSDLRLGGGRTS
SEFDWDNTSRDSSEASSRGGDSRPRMVLPSFLPQDLSHFDFDECEAATMLVSLGSSRSGT
PSFSPISNQSPFSPTPSPSPSPLLSFRPATFSPITAPPSLTPRRHRHLSGTKMSTPGSER
ERHLSGIVPTFQTNLTFTVPMSPSKRKLDALPPPLPLPDQQLGETIGLRPAAFRVLSPQS
QPTTPSSLSFPRPRSATSRPPSSAASTPPPMLVSPTPPSPLPQDPSPRRIVPLRDSPVIV
RNPDVPLAKFTEGPLGRRGAGGCSSRDHSQPLHLATGLQAPVPINGADTNGAVLMRNPAS
TLVLVTSSQSLTPAVTGRPIHSSPALSGGSASMSSTGSALSTSGSGGREWERKSGGHQDA
IGGTLPQPVACHPSPTALLPLILPAESPQPAPRKDIIMGRPGTVWTNVEPRSVPVFPWHS
LVPFLEPSQSSAAAQPTDGQQLVNQNNEPRCGVALVSDGRVGPPDAGRGSPSRPPPSSND
NNPQAERAERGGGDSETESDADDPFFPGVANDAAPSTGTMKRRTQSLSALPKDGDRKREK
DHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPQEKQKYHDLAFQVK
EAHFRAHPDWKWCNKDRRKSISEGRGTPGAKVARERSMSESAEPESVSQGMEVKGTAGPG
WPGGSEHHVGDYSGQLPRPRAFSQSAVHSLERRERTRDVEKLCREGTGSFRSLPPTLSLA
QCGASEDVTSDEERMVICEEEGDDDVMEDSCPEGSIDLKCKERVTDSDEDEPDGQQAFQP
VVRSSLPSSTNTSHADSHSDSTKGDTRGSAGESSERKRKRGMEGGEEGSGESKRGRGGGG
HVPSNSIPGSAPNTSAPALGYGLTQVLGAVRMAPTMVTNMVCPITSMPIPIASKPMEGSI
ALSALPGEEKATLLIGGPGAGGGPFTAGGGYLSSSSPNPVSVGPGGLQVTSLVLGGAFPN
QSIQLIAPPQSLLSSTHSTLPLPLPLLQPQFLPASSLTPPGGAKPGLTQVQYILPTLSSV
SANPKTPSPQLTQQPTGVRTLPSTPPTHVSLANGIHSGAGVEIRYATVGGVSPGERVQAQ
SPVLQSKMLVPMATVRTGSTPPQPSSLVAPPLPVQNGALPGSKIIQIAPMPRVQTNVHSA
GAVHPGSSFPVSMATATVMTPGITPPQTVLLTSPPTRITYVQSGTGVVSTATVQAPPSSG
PAYLPSSLTTLGFTAIAPAGHALVHPLVAGQPPWLAPALSPGAPGTGRQLLTTIYPAQNV
TLAPDVVTMTSVPPNLAQEVSGQSSHLAVGVQGSKDVTRSHEEGMPHLTAEMEHKPKVEG
QAQRKTKTQTKKESIKKEKMTEDVEAHSKPGANSMGTSNSNTPTGSEENGGRASHVKEEN
TDDARDYAKEKQTDVDGERERGIKMECGTPEPERSRETDDWPHEGHNKGDSGNGGHSKGA
GPREPPHPPTGQDTPPPAPHTDRDAPPSAKKTKFRPPPLRKPSDFIDKVLSGSYFEERFA
ELPEFRPEEVLPSPTLQSLATSPRAILGSYRKKRRNSTDLDSSAEDPSSPRRKTAARSRL
SSCSSEPNTPKSDVKCEGDIFTFDRAVAESEDVLGEMDRVPYSSLRRTLDQRRALVMQLF
QEHGFFPSAQATAAFQARYSDTFPSKGCLQLKIREVRQKIMQTATPGTPGISEPGGSTTG
VPGSTDSTSAANGSSNTNTRDGTGTEPGERGRSPEEPRSLGKL
NT seq
7692 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaattaaaaagcaaggaaggcgctcgcccccgtcgacccgggccaaaggtggg
aagagacggggggcggtggacagtggggagaaaagagactcagacgagaacagagaccga
tcccccaaaagtcagacctcaccccaaacctcatctcactcagagtcttctcaggaagag
tcggtgacacttacggctagggctacgccagagagggaggtccacagagaggggccccgg
ctcccagagacagcggccgcagcagcagggtccctccctgggaagtcagaggactcccgc
ccggagagtgtcaagtcgctgagcgcccacagcacagacagcagcagcagtgctgccagt
gctgccaacagccccaacccctcgtccaaccgcaagacggccaccttcaaggcccgtgtc
cccaagaagaagtacacctctgagcactgtgctgctgcagctgttgccgccaacaaccac
agataccatggcaaccccggcacgcccccactgaacagcagtagtgctcactgtggcagt
aacaccggtagtcagtcgtcgggcttatcttcggggcccgggtcgacggcaagtgagggc
ggttcgcttactgacatcaacagtcagaccaggagaccagtggaggactacattaccact
atagctccaccacaggacagggataacacacctggaccccctcccacaggggacagagtc
aggagaggcccagagggaggcagagaaatctcccccagccctgtccgctgctcctctaca
gacacagccagcgaacacgaccctgacgtgagcgagccacgccgcgccaactttccccac
accaaccccaacaccgaagcacacacactggacctggtgcaacgtagcaccccacgcact
ccgaccccacagagcctgtcggacgcgctagccgacgccctggccaaaggtctaaagaac
cagcgggtgctagccaggcaggctaggaggaggactggaaagggggaagaggagaacgga
aggggaggggggagggaggacatggactcagtgttccgagcgggcgtggtgcggcgggtg
agcggcgagcacggcagcctggaggtgcagctgaacggtgagaaggagctgtaccgctac
ccgttccgcgagggcccccaggggcccgtggacatcatcatggacgccccgccgcctggc
tcccaggccgtgcccatcggcacccctgtgtgtgtgcccttcggaggcaacgaggacggc
ggcaccacagaggcccagcgccagtggtaccgagagggcctggtcacccaggtagactcc
cacccggctgtgtcctacccctatagagtgttgttagaggacagagcgcccccaggggat
gaggagggggatggcagggtgggcactccgaccgctgtgtgggtgtcccgtcagagcctc
cgcctgctggtgcccccatgggacctggacctgggaccctctggaggggggcgagaggat
gctgccgccgagagggggagagagagggagagagaggacagggacgaaatagaagtggag
caggagctgtgtttcctcagccatgggatggggctcagcgcagctgtggctgggtccgtg
ttggggaggctttcataccctggaacggcccccgcctcctcatcttcctccactgtcagc
tcccccgtcacccccgcctcggtgctgagtctggtggccggaagagactgggagcgagag
aaggacctggtggagagagagcgggagctccagaggaaacaagagagagataaccgagag
agggccaagcagcatcaccacttcatgcccctgacccccgaggaggacatagaggtgtcc
cacttcagcatggtgcccatgggggtggcggggggggcggctaaggccctggcggtgtcc
cagcacaggcacatactctccaagccgcccccgggctacctcagcccccacctgtccgtg
gtccggggcctcggaggcaccccgctggtgggcccccacttggccctcaacccccacccc
cctgcctcccccacggtgctaatgggcctggagtcgggagccctggcagcgggggcgggc
gtcatcgccacccctcagctccctcctctgctctcctcgtcctcccgcggctccctggat
aagccaccctcgtcaaacgccaactcccacggtgcatctggagggggtggaggctcgggt
tcggcgtcctcgtcgcgctcccgcacccctctcacggcggcccagcagaagtacaagaag
ggcgacgtggtgtgtacccccacgggcatccgcaagaagttcaacggcaagcagtggagg
aggctgtgctccagagagggctgctctaaggagtcccagagaagaggctactgctcgcgt
catctctccatgagaactaaagagatggaggccagcggagggggcagagaccgtggcggg
gccagcagtacgggcaccctaaccccgtcagacctgaggctgggcggcggccggaccagt
tcggagttcgactgggacaacacgtcgcgagacagcagcgaagcgagcagtaggggaggg
gattcacgcccccgcatggtcctgccctcgttcctgccccaggacctatcacacttcgac
tttgatgagtgcgaggcggccaccatgctggtgtctctgggcagctcccgctcaggcacc
ccctccttctctcccatctccaaccagtcgcccttctcgcccacaccgtcgccctcgcca
tccccgctcctcagcttccgcccggccaccttcagccccatcacggccccgccttctctc
acccctcgccgccaccgccatctgagcgggactaagatgagcacgccgggctcggagcgc
gagcgccacctgtcgggcatcgtacccaccttccagaccaacctcaccttcaccgtgccc
atgagccccagcaagcggaaactggatgcccttcctccgcccctgcccctccccgatcag
cagctaggggagactataggcctccggccagccgccttcagggtgctctcccctcagagc
cagcccaccaccccctcctcgctctccttcccccggccccggagcgccaccagccgcccc
ccgtcatctgccgcctccacccctccgcccatgctggtgtcccccacccctccctcccca
ctgccccaggaccccagcccccgccgcatcgtgcccctgcgagactcccccgtcattgtg
aggaaccccgacgtccccctggccaagtttaccgagggccccttagggaggaggggagca
gggggctgctcctccagagaccacagccagcccctgcaccttgccaccggcctccaagca
cccgtgcccatcaacggagccgataccaatggagcggtcctcatgcgaaaccccgcctcc
accctggtccttgtaacctcctcccagtccctgaccccagccgtcaccggacgccctatc
cactccagcccagccctcagtggtggctctgcctccatgtcctctactggctccgccctc
tccacctctggatcaggcggtagggagtgggagaggaagtccggagggcatcaggacgcc
attggagggacactgccccagccggtagcctgccacccctcgcccactgccctgctgccc
ctcatcctaccagccgagtcccctcaacctgcaccccgcaaggacatcatcatgggacgg
cccgggacagtatggaccaatgtggagccccggtcagtgccagtgtttccttggcattca
ttggtccctttcctggagcccagccagtcgagtgcggctgcccagcccactgatggccaa
cagcttgtcaatcagaacaacgagcctcgttgtggggtggccctagtgagtgacggacgg
gtgggcccaccagatgcaggacgagggtctccatcccgcccaccgccctcctccaatgac
aacaacccccaagctgaaagagcagaaagaggcggaggcgacagcgagacggagagcgat
gcagatgacccgttctttccgggtgtagcaaatgatgctgccccgtctacaggcactatg
aagaggcggactcagtccctcagtgctcttccaaaagatggagacagaaagagggaaaag
gaccacattcggcggccaatgaacgcgttcatgatctttagcaagcgtcaccgggcgctg
gtgcaccagaggcaccccaaccaggacaaccgcacggtcagcaagatcctgggcgagtgg
tggtacgccctggggccacaagagaagcagaagtaccacgacctcgccttccaggtgaag
gaggctcacttcagggcccacccagactggaagtggtgcaacaaggacaggaggaagtct
atctctgagggccgagggaccccaggggccaaagtggcacgcgagaggagcatgtcggag
agcgcagagcccgagtcagtgtcacagggcatggaggtgaagggtacggcaggcccgggc
tggcctgggggctctgagcatcatgtgggggactacagtggccagctccctcgcccccgt
gccttctcccagagtgcagtacacagcctggagaggagggagcggaccagagatgtggag
aagttgtgtcgagaagggaccggctcgttccgcagcctcccccctactctctccctggca
cagtgtggggccagcgaggacgtgaccagcgacgaggagcgcatggttatctgtgaggaa
gagggggacgatgatgtcatggaggactcgtgccctgaaggatccatagacctcaagtgt
aaagagagagtgactgacagtgacgaggatgagccggatggacagcaagccttccagcca
gtggtccgttcctctctcccctcctccaccaacacctcccacgccgactctcactccgac
tctaccaagggggacacaaggggcagcgccggagagagctctgagaggaagagaaaacga
gggatggagggaggagaagagggaagtggagaatccaaaagaggaaggggtggagggggg
cacgttccctctaattccatccctggatcggcgcccaacacctcggcccctgctctaggt
tatggactcacccaggtgctcggtgcagtccggatggcccccaccatggtgaccaacatg
gtatgccccatcaccagcatgcccatccccatcgccagcaagccaatggaaggctccatt
gccctcagtgcactgcctggggaggagaaagccacgcttctgattggaggaccgggagca
ggaggcgggcctttcacagcagggggtgggtacttgtcctcgtcctctccaaatcctgtg
agtgtggggccgggggggctgcaggtcaccagtctagtgctgggaggtgctttccccaac
cagtctatacagctcatagccccgcctcagtctctcttaagctccacccacagcaccctg
ccactccccctccccctgctgcagccccagttccttcctgccagttctctcaccccccct
ggcggtgccaagcctggcctcacccaggtgcagtacatcctgcccaccctgtcatctgtc
agcgccaaccccaagaccccctccccccagctaacccagcagccaaccggcgtccgcacg
ctgccctccactccgcccacacatgtctccctggccaatggaatacattcgggggcagga
gtggaaataagatatgccacagtgggaggggtcagccctggagaaagagtccaagcccag
tctccagtcttgcagagcaagatgttggttcccatggcaacagtgagaaccggctctact
cctcctcagcccagctccctggtggctcctccccttcctgtgcaaaatggtgctctacca
ggaagcaagattatccagatcgcccccatgccgagggtccagacaaatgtccactctgct
ggagcagtgcatcctgggagttccttccctgtatccatggcaacagccactgtgatgact
cctggcatcacaccccctcagaccgtgttgctaacctcgcctccaacaaggatcacttat
gtccaatcaggcaccggagtggtctccacggcaacagtccaggcccctccctcttcaggc
cccgcctacctgccatcgtccctgacaaccctgggcttcaccgccatcgccccggccggc
cacgcccttgtgcaccctctcgtagcgggccaaccaccctggctagccccagccctttcc
cctggagccccggggaccggacgtcaactcctcaccaccatttacccggcccagaacgtc
accctggcgccagatgtggttaccatgacctccgtgccccccaatttggctcaagaagtg
tccggccaatcatcacacttggctgtcggcgtccaaggttcaaaggatgtgacccggtca
catgaagagggaatgccacacctgactgcagagatggagcacaagccaaaggtcgagggc
caggcccaaaggaagaccaagacacagacaaagaaagagagcataaagaaagaaaagatg
acagaggatgtcgaggcacatagcaaacccggtgctaactcaatgggtacgtccaacagc
aacacaccaacagggagtgaagaaaacggtggtcgagccagccacgtgaaagaagagaac
acggacgatgccagagattatgccaaagagaaacagacagatgtggatggagagagggag
agggggataaagatggaatgtgggacacctgaaccagagaggtccagggagacagatgat
tggccccatgagggccacaacaaaggggacagtggcaacgggggccacagcaaaggggct
ggaccgagggaacctccccaccctcccacaggacaggacactcctccgcctgccccacac
actgacagggacgcgcccccctcagccaagaagaccaaattccgccctccgccactcaga
aagccctccgacttcattgacaaggtcctgtcggggtcctattttgaggagcgctttgcc
gagctgccagagttcagaccagaagaggtgctgccctctcccaccctccagagtctggcc
acttccccccgagccatactgggcagctaccggaagaaaaggaggaactccacagacctg
gactcgtctgcagaggaccccagctctcccaggaggaagactgcagctcgtagccgtctc
tccagctgcagctcggagcccaacacacccaagagcgacgtcaagtgtgagggggacatc
ttcacctttgacagagctgttgctgagtctgaggatgtcttgggggagatggacagagtg
ccgtactcctctctccggaggactctggaccagcgcagggctctcgtcatgcagctcttc
caggaacacgggttcttcccttcagcccaggccactgcagccttccaggcgcgctactca
gacacctttccctccaaggggtgtctgcagctgaagatcagggaagtgaggcagaagatc
atgcagacagccacacctggaacccctggaatctctgagcccggtgggtcaacaacaggg
gtcccggggtcaacagactccacctccgctgccaacggctcctcaaatactaacactcga
gatggtacagggacggagcccggagaaagagggaggagtcccgaggagcccaggagtttg
ggtaaattgtag
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integrated database retrieval system
