Salvelinus namaycush (lake trout): 120027534
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Entry
120027534 CDS
T07522
Name
(RefSeq) thrombospondin-3b-like isoform X1
KO
K04659
thrombospondin 2/3/4/5
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04145
Phagosome
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120027534
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120027534
09144 Cellular community - eukaryotes
04510 Focal adhesion
120027534
09142 Cell motility
04820 Cytoskeleton in muscle cells
120027534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120027534
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120027534
00536 Glycosaminoglycan binding proteins [BR:
snh00536
]
120027534
Membrane trafficking [BR:
snh04131
]
Endocytosis
Phagocytosis
Opsonins
120027534
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120027534
Exosomal proteins of colorectal cancer cells
120027534
Exosomal proteins of bladder cancer cells
120027534
Glycosaminoglycan binding proteins [BR:
snh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120027534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
cEGF
EGF_3
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
120027534
NCBI-ProteinID:
XP_038828441
UniProt:
A0A8U0PPV5
LinkDB
All DBs
Position
Sna32:12832104..12871747
Genome browser
AA seq
955 aa
AA seq
DB search
MDMVRFVLSLLLASAAVLLGLTRASEMQVIDMLELHDARQSASAVGKMSGALGFVSDLYL
VSTLRLPPKLGGVLLGVYNKGDNRKYLEVALMGKVNKVLVRYVREDGKLHTVNLQNPGLS
DGLTQSLILRVGGLQRNHLHMELYVNCRLADSAQVLPSMVQLPAEAESVEIRNGQKAYAR
LQGSVDSLQLALGGSIAKAGILTDCPFQGDTNFQNSVSADVNAILGDHTKALIGQLIIFN
QILGELREDIREQVKEMSLIRNTILECQVCGFHETHSRCEPNPCYKGVACTETWEYPGYR
CGACPDGMTGNGTHCQDIDECALARPCFSPEGCVNTAKGFTCEPCPVGFSGPLLSGLGVE
FAKSHKQKCTDVDECADLSKSCVPNSVCINTEGSFRCGPCKESFVGNQTVGCFLRRSCAT
LGFNPCDVNAHCVIKGAARVSCECNVGWAGNGHTCGPDTDIDGYPDQPLPCIDNDYHCRV
DNCVNTPNSGQEDADGDGIGDQCDEDADGDGIRNVEDNCRLVPNKDQQNSDTDSYGDTCD
NCPNVPNGSQKDTDGNGAGDTCDNDIDGDGIPNVLDNCPKVPNPMQTDRDGDRVGDACDS
CPEVNDPMQSDIDNDLVGDVCDTNQDMDGDGHQDSRDNCPDVPNSSQLDSDNDGIGNECD
DDDDNDGIPDARPPGPDNCRLIPNPSQTDTDGNGIGDMCENDFDNDSVIDLIDVCPESAE
VTMTDFRNYQTVILNPEGDAQIEPKWIVLNRGMEIVQTMNSDPGLAIGYTAFNGVDFEGT
FHINTATDDDYVGFIFGYQDSSSFYVVMWKQTEQTYWQSLPFRAMAQPGLQLKAVKSRTG
PGEYLRNALWHTGDTPGEVTLLWKDPRNVGWRDKTSYRWHLSHRPQVGYIKVKLYEGMTL
VADSGVLVDTSMRGGRLGVFCFSQEQIIWSNLGYRCNDTVPEDYEFYRKQIHIRV
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggatatggtgaggtttgtgctaagtttgctgcttgcgagcgcggcggttctcttgggc
ttgaccagggcttcagaaatgcaagtgattgacatgctggagctgcacgatgccaggcag
agtgcgtccgcggtgggaaagatgtcgggggctctgggcttcgtgtcggacctttacctg
gtgtcaactcttcgtctgccacccaaactgggaggagtgctgttgggagtctacaacaaa
ggcgacaacaggaagtacctggaggtggccctcatgggcaaggtcaacaaagttctggtg
cgctacgtacgcgaggatggtaaactccacacagtgaacctccagaaccccggcctctcc
gatggactcacccagtcactcatcctccgtgtgggtgggctccaacgaaaccacctccac
atggaactctatgtcaactgccgattggctgactcagcacaagtcctgccatccatggtc
cagctcccagccgaggcagagtctgtggagatacgcaacgggcagaaggcctatgccagg
ctacagggctcagtggactctttgcaactggctttgggtggctccatagccaaagcagga
atccttaccgactgtccgtttcagggggatacaaattttcagaattcagttagcgcagat
gtcaatgccattctgggtgaccacaccaaggctttgattggccagctgatcatcttcaac
cagattcttggcgaactccgagaggacatcagggaacaggtaaaggagatgtctctgatt
aggaacactatcttggagtgccaagtgtgtggcttccatgagacccactctcgctgcgag
cccaacccctgctataagggcgtggcctgtacagagacctgggagtacccagggtaccgt
tgtggtgcctgcccagacggcatgacggggaatggcacccactgccaggacattgacgag
tgtgctctagcccggccctgtttctcgcctgaggggtgcgtaaacacggccaagggcttc
acctgtgaaccatgtcccgtcggcttctcaggacccctccttagcgggcttggggtggag
tttgccaagagccacaagcagaagtgcacagatgtggatgagtgtgctgacctctccaag
tcctgcgtgcccaactctgtctgcatcaacacagagggctcgttcaggtgtggtccgtgt
aaggagagcttcgtaggcaaccagacggtgggctgtttcctgcggaggtcctgcgccacg
ctgggcttcaacccctgtgacgtcaacgcccactgtgtcataaagggtgctgccagggtc
tcctgcgagtgtaatgtgggctgggcaggtaatgggcatacatgtggtccagacacagac
atcgatggctaccccgaccagcctctcccctgcatagacaatgactatcactgccgagtc
gacaactgtgtgaacacgcccaactctggccaggaggacgcagacggagacggtataggt
gaccagtgtgatgaagatgcggatggagacggcatcaggaacgtggaggacaactgccgt
ctggtccccaacaaggatcaacagaactcggacacagactcatatggggacacgtgtgac
aactgccccaacgttcccaatggaagccagaaggacacagatggaaacggggctggggac
acctgtgacaatgacattgatggggatggtatcccaaacgtgctggacaactgtcccaag
gtgcccaaccctatgcagactgaccgtgatggggatcgagtgggggacgcctgtgacagc
tgcccggaagtcaacgaccccatgcagtctgatatagacaacgacctggtgggagatgtg
tgtgacaccaaccaggacatggatggggatggccaccaggattcaagggacaactgtcca
gacgtccctaacagctcccagctggactcagacaatgacggcatcggcaacgaatgcgac
gatgacgacgacaacgatggcattccagatgcaagacctcccgggccggataactgtcgt
ctcatccctaaccccagccagacagacactgatggaaatggcattggtgacatgtgcgag
aatgactttgacaacgactccgtgatagacttgattgacgtgtgtccagagagcgctgaa
gtcacaatgaccgacttcagaaactatcagacggtcatcctgaacccggagggcgatgcc
caaatcgaacccaagtggattgtgctcaatcggggtatggaaattgttcaaaccatgaac
agtgaccctggtttggccataggctacacagcctttaacggggtagactttgaagggacg
ttccacatcaacacagccacagacgatgactacgtgggcttcatcttcggttaccaggac
tcgtccagcttctacgtggtcatgtggaaacagacggagcagacctactggcagtcgctg
ccttttagggccatggctcagccaggcctgcaactaaaggcagtgaagtcacgtacgggt
ccaggcgagtacctccggaacgccctgtggcacacgggcgacaccccgggcgaggtcacc
ctgctgtggaaggacccccggaatgtggggtggagggacaagacatcctaccgctggcac
ctcagccaccgcccgcaggtgggctacatcaaagtgaaactgtatgaaggcatgacattg
gtggcagactcaggcgtgctggtggacacttcaatgaggggcgggaggctgggcgtcttc
tgcttctcccaggagcaaatcatctggtccaacctgggctatcgctgcaacgatactgta
ccagaggactatgagttctaccgcaagcagatccacatcagggtctga
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