Salvelinus namaycush (lake trout): 120027667
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Entry
120027667 CDS
T07522
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120027667
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120027667
Spliceosome [BR:
snh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120027667
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Ortholog
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120027667
NCBI-ProteinID:
XP_038828593
UniProt:
A0A8U0PPW2
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All DBs
Position
Sna2:66203643..66210930
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AA seq
427 aa
AA seq
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MAENDVDNELLDYEEDEEPQVAPETATPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIVVGTPGRILALIR
NKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgacgttgacaacgagctgttggactatgaagaggatgaggagcctcaa
gttgccccggagaccgccacacctgcgggcaagaaggaggtaaagggctcttatgtctcc
atccacagctccggtttccgagacttcctgctcaaaccagagctgctccgcgccattgtc
gactgtggctttgaacatccctctgaagtccaacacgagtgtatcccacaggccatcctg
ggcatggacatcctgtgccaggccaagtctggtatgggcaagacggctgtgtttgtactg
gccaccctgcagcagattgaacctgtggatgggcaggtgtctgtgctggtgatgtgccac
acacgagagctagccttccagatcagcaaagagtatgagcgcttctccaagtacatgccc
accgtcaaggcggctgtgttcttcgggggcctgtccatcaagaaggatgaggacgtgctg
aagaagaactgcccccacatcgtggtgggaacgcccggccgcatcctggccctcatccgc
aacaagaccctgaacctgaagaacgtgaagcactttgtcctggatgagtgtgacaagatg
ctggagcagctggacatgaggcgtgatgttcaggacatcttcaggctcacaccccatgag
aagcagtgcatgatgttcagtgccaccctaagcaaagagatccgccctgtctgccgcaag
ttcatgcaggatcccatggaggtgtttgtggacgatgagaccaagctaacgctgcacggc
ctgcagcagtactactgcaagctgaaggatagcgagaagaaccgcaagctcttcgacctg
ctcgatgtgcttgagttcaaccaggtggtgattttcgtgaagtctgtgcagcgctgtgtg
gctctgtctcagctgctggtggagcagaacttccctgcaatcgccatccataggggcatg
gcccaggaagagaggctttcccggtaccagcagttcaaggacttccagaggcggatcctg
gtggccaccaacctgtttggccgagggatggacattgagcgcgtcaacatcgtcttcaac
tacgacatgcccgaggattccgacacctacctgcacagagtggcccgtgctggcaggttc
gggacgaaaggtctggccgtgacctttgtgtctgacgagactgacgccaagaccctgaac
gatgtgcaggaccgcttcgaggtcaacgtggcagagctcccagaagagattgacatctcc
acctacattgaacagtccagatga
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