Salvelinus namaycush (lake trout): 120027676 Help Entry 120027676         CDS       T07522                                  Symbol col11a1a Name (RefSeq) collagen, type XI, alpha 1a   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism snh  Salvelinus namaycush (lake trout) Pathway snh04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:snh00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     120027676 (col11a1a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:snh00536]     120027676 (col11a1a) Glycosaminoglycan binding proteins [BR:snh00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120027676 (col11a1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1 Motif Other DBs NCBI-GeneID:  120027676 NCBI-ProteinID:  XP_038828599 UniProt:  A0A8U0TV09 LinkDB All DBs Position Sna33:17714996..17803756 Genome browser AA seq 1899 aa AA seqDB search MEMQRWSTRWKTKRWIMDSTVTAFITLTLVLQATHVRAAEPVDVLKVLEFHNTPEGVRKT SGFCTNRRASKPDTAYRVGKQAQISAPTKQLFPGGVFPEDFSILTTLRPKAGLQSFLLSV YSEQGVQQLGVEVGRSPVFLYEDQSGKPAPEDYPLFRSLNLADGKWHRVAISVEKKTVTI IVDCKQKITKPLLRSDRASINTNGITVFGTRILDEEVFQGDIQQLLIVADPKAAYDYCEH YSPDCETPHGHSLQAQQPEDEYTTADDLDYTQFYDYSEVEGETENVPTDEYEAGSDPQVN ETLKRKKNTLICPVRKKRSVYMKKKRTRKSLKSKAKPLKFQASKKSAAKKLAVAKKKRQM NGYHGYQATAPELHRYRLNNVDGEYTEYTDSELDYGTVEGTQTQSPIATSGPNEAVEEEI VAGDYVVTGAAPLSQEPTGAPEAGLDSVDPGVDEYDFKEYDLGGVLDNKQYEYGVYDEYG NVAAELPNHMDTVEEEVGLGVPAETEEFTQTAVAGGGEKGEKGEPAVIEPGMLIEGPPGP AGPAGLPGPSGLHGPPGVAGDPGDRGPAGRAGLAGADGLPGPPGTMLMLPFRFGGDGEKG PVVSAQEAQAQAILSQARLAMRGPSGPMGLTGRSGPVGVPGSAGLKGDSGDPGPQGPRGV QGSAGQIGKSGKRGRGGADGARGMPGESGSKGDRGFDGLPGLPGEKGHRGETGPLGPPGA PGEDGQRGEDGEIGPRGLAGESGPRGLLGPRGPPGPTGQPGVAGVDGPHGPKGNMGPQGE PGPPGQQGIPGTQGLPGPQGPIGPPGEKGPQGRSGLAGLPGSDGPPGHPGKEGPPGEKGA LGQSGPQGPIGYPGPRGVKGADGVRGLKGGKGEKGEDGFPGFKGDMGLKGDRGELGVLGP RGEDGPEGPKGRAGPNGESGPMGAAGEKGKLGVPGLPGYPGRQGPKGSSGFPGFPGANGE KGARGVAGKPGPRGQRGPTGPRGGRGARGPTGKPGPKGTAGNDGPPGPPGERGPQGPQGP VGFSGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGH PGPPGPPGEQGLPGSAGKEGAKGDPGPQGASGKDGPAGLRGFPGERGLPGTSGPAGLKGG EGPQGPSGPVGSPGERGAAGPAGPIGLSGRTGPQGPPGPAGEKGGPGEKGPQGPAGRDGV QGPVGLPGPAGPQGPPGEDGDKGEVGEPGQKGSKADKGEQGPPGPAGLQGPIGNPGPAGG DGEPGPRGQQGMFGQKGDEGSRGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGP RGPQGPSGADGAQGPPGGVGAMGGVGEKGENGEAGNPGTPGEPGTGGPKGERGDKGEAGP PGAAGPAGAKGPPGDDGPKGNPGPVGFPGDPGPPGEAGVAGTDGSAGEKGEDGESGQPGP PGPSGESGPPGPPGKRGPPGTAGAEGRQGEKGAKGESGAEGPPGKTGPVGPQGPSGKPGP EGLRGIPGPVGEQGLPGSSGQDGPPGPMGPPGLPGLKGDPGTKGEKGHSGLIGLIGPPGE QGEKGDRGLPGPQGSPGGKGDGGISGSSGPLGPPGPPGLPGPGGPKGSKGSSGPAGQKGD TGTIGPPGPPGPPGEVIQPLPIQSPKKNRRHADMQADAAGTMMDYGEGMEDIFGSLNNLK QDIERMKYPMGTQNNPARTCKDLQLAHPEFPDGEYWIDPNQGCSGDSFSVYCNFTAGGET CIYPDRKSSGVRISSWPKEIPGSWFSEFKRGKLLSYVDAAGNTINEVQMTFLKLLTASAR QNFTYNCHQSVVWHDETTDSYDKVLRFLGSNDEEISYDNNPYIRALTDGCATRKGYGKTV IEINTPKIDQVPIIDVMLYDFGDASQKFGFEVGPVCFLG NT seq 5700 nt NT seq  +upstreamnt  +downstreamnt atggagatgcaaaggtggtccacaaggtggaaaacgaaaaggtggattatggattccact gtaaccgcattcatcactttaaccctggttcttcaggctacacatgtcagagcagctgaa ccggtggacgtgctaaaagtattagaatttcacaatacccccgaaggagttcggaaaaca tcaggattttgcacaaaccgaagggcgtctaagccggacacagcctacagagttggaaaa caggcccagatcagtgcccccaccaagcagttattcccagggggtgtgttccctgaagac ttctccatcctgaccaccctcaggcccaaggctggcctccagtccttcctgctgtctgtt tacagtgagcagggcgtgcagcagctgggggtggaggtgggacgctcacccgtcttcctg tatgaggaccagagtggcaagcctgctcctgaggactaccccctgttccgctctctcaac ctggccgacggaaagtggcatcgtgtggccatcagtgtggagaagaagacggtcaccatc atcgtggactgtaaacagaagatcaccaaacccctcctcaggagtgaccgtgcctctatt aacaccaacgggatcactgtgttcggaaccaggatccttgacgaggaagtctttcagggt gacatccagcagctgctgattgtggccgatcctaaagcagcttatgactactgtgaacac tacagccccgactgtgaaactccccacgggcactccctgcaggcccagcagcccgaggac gagtacactactgctgatgacttagattacactcagttctatgattactctgaagtagaa ggagagacagagaatgttccaacagatgagtacgaggcgggtagtgaccctcaggtaaat gaaacactgaaaagaaagaaaaatacgcttatttgtcctgtgagaaagaaacgtagtgtc tacatgaaaaagaagaggacccgaaagtcccttaagtctaaggctaagcccctaaagttc caggcctctaaaaaatctgcagctaaaaagttagcggtcgctaagaagaagagacagatg aatggctatcatggctatcaagctaccgcgccggaactacaccgatacagactaaacaat gtagacggagaatacactgagtatactgacagtgagcttgactacggaactgtagagggt actcaaactcagtctcccattgccaccagtggaccaaacgaggctgtcgaggaggagatt gttgctggtgactatgttgtcactggagccgccccactgagtcaggagcccaccggtgcc cccgaggctggcctggacagtgtggaccccggagtggacgagtatgactttaaggagtat gacctagggggcgtgttggacaataagcagtatgagtatggggtgtatgatgagtatgga aatgtggccgctgagctacccaaccacatggatactgttgaagaagaggtggggctgggg gttcccgcggaaacggaggaattcacccagactgccgtggctggtggtggggagaaagga gagaagggcgaacccgctgtgatcgaacctggcatgctgattgaaggacctcctggacct gcaggcccagctggtctaccaggcccctcaggtctgcatggaccccctggtgttgctgga gatcctggtgacaggggtcccgcagggcgggcaggtctggcaggagccgacggtttacca ggtcctccgggtaccatgctgatgctgccattccgttttggaggggacggagagaaggga cccgtggtgtctgcccaggaggcccaagcccaggccatcctctcccaggctagactcgcc atgagaggtccctcaggtccaatgggtctcacaggaagatccggtccagtgggtgttcct ggttctgctggacttaaaggtgatagtggagaccctggtcctcagggccccaggggagtc caagggtctgcaggacaaataggcaaatctggcaagaggggtcgtggcggagccgatggc gcccgaggaatgcctggagagtcaggctctaagggtgacagaggctttgatggcctgccc ggtctgcctggtgagaagggacacaggggggagacaggaccactgggaccacctggagcc cctggagaggatggacagagaggcgaggatggagagatcgggccaaggggattggctgga gagagcggtcctagaggtctgcttgggccccgcggtccacccggtccgactggacagcct ggtgtcgctggagtggacgggccacacggtcccaaaggaaacatgggacctcaaggagag ccaggacctccgggtcagcaggggatcccagggacacaaggtcttcctggtcctcaaggt cccatcggaccgcctggtgaaaaaggacctcagggcaggtcggggttggctggtttaccc gggtcagatggacctcctggtcatcctggtaaagagggcccacctggtgagaagggagct ttaggccagtcaggtccccagggtcctattggttatcctggtcctcgtggtgtcaagggt gctgacggtgttcgtggactgaagggtggaaagggagagaagggtgaggacggtttccct gggttcaagggagacatgggtctcaaaggtgacaggggtgagcttggtgtgcttgggccc cgcggggaggacggacctgagggccccaagggccgagcagggcccaacggagagtctggc cccatgggtgctgctggagagaagggaaaactgggtgttccaggattacctggctaccca ggaagacaaggtccaaagggttccagcggcttcccgggcttcccaggggccaacggagag aaaggagccaggggcgtggcgggcaaacccggtccaagggggcaaagaggtccaacgggt ccacgagggggtcggggtgctagaggtcctacaggcaagccaggccctaagggcacggcg ggcaatgatggtccacctggcccgcctggcgagagaggacctcaaggaccccagggcccc gtcgggttctcaggaccaaagggcccccctggaccacctggaaaggatgggctgcccggc caccctggtcagcgaggagagacgggattccaaggaaagacaggtccacccggcccaggg ggagttgttggtcctcagggtcccacaggagagactggtcccatcggtgagagaggccac cctggacccccaggtccacccggagagcagggtcttcctggctctgctggcaaagaggga gccaagggagaccccggtccccaaggagcctcaggtaaagacggtcccgctggtctacga ggattcccaggagagagaggtcttcccggcacgtcgggtccagctggtttgaagggagga gaaggacctcagggaccctctggccccgtgggctcccctggtgagagaggtgctgctgga cctgccggccctatcggtttatctggtagaactggtcctcaggggcccccaggacctgct ggagagaagggagggcctggtgagaaaggtccccaaggaccagctggtcgggacggagtc caaggtccagtgggtctgcctggccccgccggacctcagggtccacccggagaggacggt gacaagggagaggttggagagccaggtcagaagggaagcaaagcagacaagggtgaacag ggtcctcctgggccagctggtctccagggtcccatcggtaacccaggacctgcaggaggt gatggagagcccggtcccaggggtcagcaggggatgttcggacagaagggagacgaagga tccagaggtttccccgggccccctggtcccattggtctgcagggtcttcctggacctcca ggagagaagggtgagaacggagatgtcggtccgatgggtccccccggtccacctggtccc agaggtcctcagggtcctagtggagctgatggtgcacaaggtcctcccggtggtgtgggt gccatgggaggcgtgggtgagaagggtgaaaacggtgaagctggcaacccaggaacccct ggagagcccggaactggagggcctaaaggcgagagaggagacaagggagaggcaggacca cccggagctgctggacccgctggcgccaaaggaccacctggagatgatggacccaaaggc aaccctgggccggttggtttccctggagaccctggtccacccggtgaggccggtgttgct ggaactgatggctctgcgggagagaaaggagaggatggtgaatctggtcagcctggtcct cctggtccatctggtgaatctggtccacctggtcctcccggcaagagaggccccccagga actgccggtgcagagggtagacaaggagagaagggcgccaagggtgagtctggagccgag ggacccccaggtaaaactggcccagtcggcccacaggggccctcaggaaagcccggtcca gaaggtctgcgtggaatccctggccctgttggtgaacaaggacttcctggttcctctgga caagacggcccacctggacctatgggaccccctggtctcccaggtctgaagggtgacccc gggaccaagggtgaaaagggtcattcaggtctgattggtctgattggaccccctggcgag cagggagagaagggagacagaggcttgcctggaccccagggttctcctggaggcaagggc gacggtggtattagtggatcttcaggtcctctcggtcctcctggtcctccaggcctgcct ggtcctggaggtcctaagggatctaagggttcatcgggtcctgctggtcagaagggagac accggtacgatcggtccacctggtcctcctggtccccctggtgaggtgatccagccactg cccatccagtctcccaagaagaaccgcagacacgcagacatgcaggcggacgcggcgggt accatgatggactacggagagggcatggaggacatctttggttcgctcaacaacctcaaa caggacattgagaggatgaagtaccccatgggcacacagaacaacccagccaggacctgc aaagacctgcagctcgcccacccagagttccctgatggcgagtactggatagatcctaac cagggatgctcaggggactccttctcggtctactgtaacttcacggctggaggagagacc tgtatctacccagataggaagtccagcggagtcagaatatcttcatggcccaaagaaata cccgggtcgtggttcagtgaatttaagcggggtaaactattgtcatacgttgacgcagcc ggcaacacaataaacgaggttcagatgaccttcctgaaactactgactgcttcggccagg cagaacttcacctataactgccatcagtctgtggtgtggcacgacgagaccaccgacagc tatgacaaggtgctgcgattcctaggatccaacgacgaggagatatcctatgacaacaac ccctacatcagggccctcacagatggatgcgcgacgaggaagggctacggaaagactgtg atagagattaatactcccaaaatcgatcaggttcccatcatagatgtcatgttgtatgac tttggagatgccagccagaagtttggatttgaagtgggtccagtctgcttccttggctaa

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