Salvelinus namaycush (lake trout): 120027819
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Entry
120027819 CDS
T07522
Name
(RefSeq) transcription factor Sox-17-alpha-A-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
120027819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120027819
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120027819
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
120027819
NCBI-ProteinID:
XP_038828794
UniProt:
A0A8U0TV65
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All DBs
Position
Sna33:complement(2636941..2639305)
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AA seq
395 aa
AA seq
DB search
MSSPDAGYASDDQTQPRCAMSVMMPGMGHCQWADPLSPLGDTKVKSESCATSSGNQNRGK
TEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVSEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHGVSDHQSTSLGGDGRVCMEGLGLGY
HHEHGYQVSTQSLGHYRDAQALGGASYEPYSLPTPDTSPLDAVESDSMFFSGHSQEECHM
MPAYAYHSQGAEYTPQDPHSNQHANHILHRHLSSPTEQQQGHQAGPMPPSFNQLAMYYSQ
HCSPSHPKRHPGHGTGQRSPPPDSHPADQVEQMHPSELIGEVDRSEFEQYLSSSRPGDMT
GLSYGAHEANMQGPESLISSVLSDASTVFYCNYTS
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtccggatgcgggttacgccagtgacgatcagacccagcctaggtgcgcgatg
tcagtcatgatgcctggaatgggacactgtcagtgggcagaccccctgagccctctcggg
gacaccaaagtgaagagcgagtcgtgcgctaccagctccgggaaccagaaccgtggaaag
actgagccgcggatccggagacccatgaatgcgttcatggtgtgggcaaaggatgagcgc
aaacgactggcacaacaaaatcctgacctgcacaatgcggagttgagcaaaatgttgggg
aagtcgtggaaagcccttcctgtgtccgagaagcgcccctttgtagaggaggctgaaagg
ctccgggtccagcacatgcaggaccaccccaactacaaataccgaccccggcggaggaag
caggtgaagaggattaagcgtctggactcagggttcctggttcatggtgtgtccgaccac
cagagcacctccctgggtggggacggccgagtgtgtatggagggcctggggctgggttac
caccacgagcatggctaccaggtgtcgactcagtccctcggccactaccgcgacgcccag
gccctcgggggggcttcctacgaaccctacagcctgcccacccccgacacctccccacta
gatgccgtggaatcagactccatgttcttctccggccactctcaggaggagtgccacatg
atgcctgcgtacgcctaccactcccagggggcagagtacacacctcaggaccctcactcc
aaccagcacgccaaccacattctccacagacacctctcctcccccactgagcagcagcaa
ggccaccaggctggccccatgcccccctccttcaaccaattggctatgtactacagccag
cattgtagccccagtcaccccaagcgacacccaggacatgggacaggacagcgctcccct
cccccagactcccacccagcagaccaggtggagcagatgcatccatcagagctgataggt
gaggtggaccggagtgagtttgaacagtacctgagctcctccagacctggggacatgaca
ggcctgtcgtatggggcacatgaggccaacatgcagggacctgagagcctgatatcctct
gtgctctctgatgccagcacagtgttctactgtaactacacctcctaa
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