Salvelinus namaycush (lake trout): 120027832
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Entry
120027832 CDS
T07522
Name
(RefSeq) nucleoporin p58/p45-like isoform X1
KO
K14307
nucleoporin p58/p45
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120027832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120027832
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120027832
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_FG2
FapA
Nup49_C
PSY3
Tox-ODYAM1
JAKMIP_CC3
PBC
Motif
Other DBs
NCBI-GeneID:
120027832
NCBI-ProteinID:
XP_038828814
UniProt:
A0A8U0PS64
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Position
Sna33:complement(28339393..28349247)
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AA seq
603 aa
AA seq
DB search
MSGFNFGSGAIGSTNAGGGFSFGAAASTPAAAGTGGFTLGGALGATAPASTTSSLGLGAS
LFSQKPTGGFSFNTPPSGAAAPTQGLTLGAPAASTAPTTGFSMTFNKPSASAQPFSLTAA
SSAPTGAGLTLGSVLTSTAPQQGATGFSLNLGGVAASTAPSTGLSLGSSMFSNMATTGLS
QSTLGGLGFALGLGQTTLGSGGLTLGSLASTSTAVSAAPSLGLGGVDFSTSSEKKSDKSS
GASPQDSKALKDENLPPVICQDVDNFQKFVKEQKQVHEEISRMSSKAMLKVQDDIKSLKQ
LLSVSASGLQRNALAIDKLKMETAQELKNADIALRTQKTPPGLQHDNTAPYDYFRCLVEQ
FEVQLQQYRQQIEELENHLTTQGSGSHITPQDLSLAMQKLYQTFVALAAQLQSVHENVKT
LKQQYLGYRRAFLEDSTDVFESKRVASKKWQSAPRITTGPAPFSSVPNAAAVAMAATLSQ
QQQPGPGSQASLGSGLGNPFALGVGSSLGTSGLGVFGGGPGFGGVATGGSSFGFSSATKP
SGGSLSAGFGSNSSSGFNFSNPGLNASAGLTFGVSNPPATGFGTGGPLLQLKKPPVGNKR
GKR
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggctttaatttcggatccggggctattggttccaccaacgctggcggagggttt
tcgtttggagccgctgccagtaccccagctgcagcaggtacaggtgggtttactctgggt
ggagctctgggtgctacagccccagcctccaccacctcttctctgggcctgggtgcatca
ctattctcacaaaaacctactggggggttctcctttaacactcctccctcaggagctgct
gcacccacccaaggccttacattaggtgccccagcagcctctacagcccctaccacgggc
ttcagtatgaccttcaataaaccctctgcctcggcccaacccttctccctcactgcagcc
tcctcggcccccacaggggcaggactgacactaggctccgtcctcacctccactgcgcca
cagcaaggagccacaggattctctctcaacctagggggtgtggccgcaagtacagcccca
tccacgggtctatcgctgggttccagtatgttctctaacatggctactactggtctgagt
cagtccactcttggaggactggggtttgcgttaggtttgggccagaccactctcggatca
ggggggttgacgttaggttccctggcctctacctccacggcggtgtcagcggcccccagc
cttggactgggcggagttgacttcagcacctcctcagagaagaaaagcgacaaatcatca
ggggccagcccacaagacagtaaagctttgaaagatgaaaatttgcctccagtcatctgt
caggatgtagacaacttccagaagtttgtgaaggagcagaagcaggttcacgaggagatc
agcaggatgtcatctaaagcgatgctgaaggttcaggatgacatcaagagtctcaaacag
ctgctgtctgtcagcgcttcgggactacagagaaacgccctggctatagacaaactgaag
atggagactgcgcaggagttgaagaatgcagacatagctctgcggactcagaagactccc
cctggactccaacacgacaacacagctccctatgattatttccggtgtttagtggaacag
tttgaggtccagttgcagcagtacagacagcagatagaggagctggagaatcacctcact
acacagggcagtggatcacacatcacaccacaggatctgtcactggccatgcagaagttg
taccagacgtttgtggctctggctgctcagctccagtcagtacacgagaacgtcaagacc
ctgaagcagcagtacctgggataccgccgggccttcctggaggactccacagacgtcttc
gagtccaagcgggtggccagtaagaagtggcagagtgccccacgcatcaccactggccct
gcccccttcagcagcgtccccaatgcggcggcggtcgccatggcagccacgctgagccag
cagcagcagcccggcccagggagccaggcgtccctggggtctggtttgggaaaccccttt
gccttgggagtgggctctagcttgggcacctcaggcctcggagtgtttggtgggggtcca
ggtttcgggggggtagcgacggggggctcctcatttggtttctcctccgccaccaagccc
tcgggagggagcctgagtgcaggttttggaagcaacagcagttcagggtttaacttcagt
aaccccggcctcaacgcgtctgcaggcctgacgtttggcgtgtccaaccctcccgccacg
ggcttcggcactggaggtccactgctgcagctcaagaagcccccggtgggaaacaagagg
ggcaagagatag
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