Salvelinus namaycush (lake trout): 120028042
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Entry
120028042 CDS
T07522
Name
(RefSeq) protein scribble homolog isoform X1
KO
K16175
protein scribble
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
120028042
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
LRR_8
LRR_14
PDZ_6
LRR_4
PDZ_2
LRR_9
LRR_LRWD1
AbLIM_anchor
DISC1_C
Motif
Other DBs
NCBI-GeneID:
120028042
NCBI-ProteinID:
XP_038829111
UniProt:
A0A8U0TV92
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All DBs
Position
33:complement(1284359..1428216)
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AA seq
1815 aa
AA seq
DB search
MLKCIPLWRCNRHVESVDKRHCNLQNVPDEIFRYSRSLEELLLDANQLRELPKPFFRLLN
LRKLGLSDNEIQRLPPEVANFMQLVELDISRNDIPEIPESIKFCKALEIADFSGNPLSKL
PDGFSQLRGLAHLALNDVSLQTLPNDIGNLANLVTLELRENLLKSLPTSLSFLVKLEHLD
LGSNELDVLPDTLGALPNLRELWLDRNQLSSLPLELGNLQRLVCLDVSENRLEELPSELS
GLLALTDLLLTHNLLEVVPDSIGSLKQLSILKVDQNRLTHLSDAIGECENLTELVLTENL
LQTLPRSLGKLKKLTNLNVDRNRLGDVPDELGGCASLNVLSLRDNRVAKLPAELADATEL
HVLDVAGNRLQNLPFALANLNLKAMWLAENQSQPMLKFQTEDDKSTGEKVLTCYLLPQQP
SPSLENLLLNSVDDSWIDSNLNRVSVIQFQEETTKQDEDDEAAAERRGLQRRATPHPSEL
KVMKKVIEEKRNEAHISSPDGEPESPGTEEKRLSNLSNQSHDSAASNSTASANSHEERRC
MITTARESLVSGRGEEEELDEMEVEYVEPTVHFAEEPIYRGGIEDGEDEEGGDGVPCSDL
EEQRPQFPTEKQRLIRKDTPHYKKNFKITKLPKPEVVAALLQGFSPDAHLAQHPTSHHPD
PEEEEEEEECMVTPQRHNRIEEPEQEDRSLLHVNSSLQPVKHTLTILRQTGGLGISIAGG
QGSTPYKGDDEGIFISRVSEEGPAAQAGVKVGDKLLEVNGVVLQGAEHHTAVEALRSSGS
AVSMSVLREHMVEPENAITTTPLRPEDDYFPRERRASGLPFCIEAGSPAVLRHRLSTCLA
RNDKGLGFSIAGGKGSTAYRTGDMGIYISRIAEGGAAHRDRTLRVGDRVITINGVDMTEA
RHDQAVALLTGTSPTIALLVERDQAEPGTAGGSPGLSRARAHSPPPPEPSDSPDQEEGND
DSSLLPHGNHLSQPLEDEYPIEEVALVKAGGPLGLSIVGGSDHASHPFGINEPGVFISKV
ISHGLACQSGLRVGDRILEVNTTDLRHATHQEAVRALLSNKQEIRMLVRRDPSPPGMEEI
VIQKQPGEKLGISIRGGAKGHAGNPFDATDEGIFISKVSSSGAAARDGRLLVGMRILEVS
NHSLLGMTHTEAVRVLRAVGDTLVMLVCDGFDPGNAAAIEASPGIIANPFAAGIVRKNSM
ESISSIDRDLSPEEMDILQKEVEMVRETSQWEREEMEKVERMRLEREEDTRLLEEETENL
GTGPLKLDYRTLAALPTTALQKVNRAPSTEPPRTDSPMRDAPYSPSTQPASIHFTPTALP
AKEDISPLSPYETRPGAIQPLSRGGGRPITSPATPDGHSSPNPFQHGPSPINSQTFDLFG
QRNNVQPNQPSPSPEPELNNEVFEDEVEGDGGMGMGQAAPVSPRPFLSSDCRDYMSLAAV
PRLSRASMDMVVKTPSPGGRDNQEQRSFRDRQKYFEIDTKQQTPDTKPKGRVSLVGADDL
KKMREEEERRFEQRAREYLMDEDDEEEDDLVKQMGVLKATGKVLLDGVEYKVEPVATPRR
HCNTPPSYSTTPPSYCGSSGPSSVDGKGDYQRNSLEESFRLEQQRPNSMTGLIPVYPGES
GAPIRTAKAERRQQERLRMQSPELAPAGDKDLSPSEKRALEAEKRAMWRAARMKSLEQDA
LKAQMVIAKSREGKKRGTLDQLAESPSPAPTPSPTPLEDFSPQGVTSPGRLSLSEKKFDY
RQFAAIPSSKPVYDIQSPDVVDDIQFIDDGSSNPVHAADPGTEVPTATSALEMALYSNKR
KLRQGCCSLETAVPT
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtgtatccctttgtggcgttgtaaccgccacgtcgagtcggtggacaagcga
cattgtaatttgcaaaatgtccccgacgagatatttcgctacagccgcagtctggaggag
cttctcctcgacgctaaccaactccgagaactacccaagcccttcttcagacttctgaac
ctgcggaaactgggtctgagtgacaatgagatccagaggctccctcctgaggtggccaac
ttcatgcagctggtggagcttgacatttccagaaacgacattcctgagatccccgagagc
attaagttctgcaaggcattggagattgcagacttcagtggaaaccccctctccaagttg
cctgatggtttctctcagctcagagggctcgcccacctggcccttaacgacgtgtcattg
cagacactgcccaacgacataggaaacctggccaacctggtgacgctggagctcagggag
aacctgctcaagtccctgcccacgtcactctctttcctggtgaaactggagcatctggat
ctgggcagcaatgaactggatgtgttgccggacacacttggtgctctccctaatctacgg
gagctgtggttggaccgcaaccagctctcctctttgccactagagctggggaacctgcag
agactagtgtgtctagacgtgtcagagaaccgactggaggagttgccctcggagctcagc
ggcctgctggccctcactgacctgctgctcacacacaacctcctggaggtggtgcccgac
agcataggctctctgaagcagctgtccatcctgaaagtggaccagaaccgactgacccac
ctgagtgacgccataggagagtgtgagaacctgacggaactcgtattgaccgagaacctc
ttacagactctgcctcgctcgctgggcaagttgaagaagctgaccaacctgaatgtggac
cgcaaccgtctgggcgacgtgcctgatgagctgggtggttgtgccagcctcaacgtgctc
tccctcagagacaaccgcgtggcgaaattgcccgctgagctggctgacgccaccgagctc
catgttctggacgtggcagggaacaggttacagaacctgccgtttgccctggccaacctc
aacctgaaggccatgtggctggcagagaaccagtcccagcccatgctcaagttccagacg
gaggacgacaagagcaccggggagaaggtgctcacctgctacctgttgccccagcagccc
tcccccagcctggagaacctgctgctgaacagtgtggacgacagctggatagacagcaac
ctgaaccgggtgtcagttatccagttccaggaggagactaccaagcaggatgaggacgat
gaggcggctgcagagcgcaggggtctccagcgccgggcgacgccccaccccagtgagctg
aaggtcatgaagaaggtgattgaggagaagaggaacgaggcccacatatccagtcctgat
ggagagccagagtctcctggtactgaggagaaacgactgagcaatctgtccaatcagagc
cacgactctgcggcgtccaacagcacagcctctgccaactctcacgaggagaggcgctgc
atgattaccacagcgagggagagcctagtgagtgggcgtggtgaggaggaggagctagac
gagatggaggtggagtatgtagagcccacggtgcactttgcagaggagcccatataccgg
ggtgggattgaggacggtgaggatgaggagggtggggacggggtcccatgcagcgaccta
gaggaacagaggccccagttccctacggagaagcagcgtctgatcaggaaggacacgccg
cactacaagaagaacttcaagattaccaagctgccaaaacccgaggtggtggccgcgtta
ctgcagggcttcagccccgacgctcacctggcccaacaccccacctcgcaccaccctgac
cccgaggaggaggaggaagaggaggagtgtatggttactccacagcgccacaacagaata
gaagagccagagcaggaggataggagtctgcttcatgtcaactcttccctgcagccggtc
aagcacaccctgaccattctacggcaaactgggggcctgggcatcagcatagccggagga
cagggatccacaccctacaagggggatgatgagggaattttcatctccagggtgtctgaa
gagggccctgcagcgcaggctggggtcaaagtgggagacaaactcctagaggtgaatggt
gtggttctccagggggcagagcaccacacggcggtagaggccctgcgcagctcgggctcc
gccgtctccatgagcgtcctccgggagcacatggtggagccggagaacgccatcaccacc
acaccgctgaggcccgaggacgactacttcccccgggagagacgggccagtggccttccc
ttctgcattgaggcaggctcccccgcagtcctccgacacaggctgtctacctgcctggcc
cgcaacgacaagggtctgggcttcagcattgctgggggcaaaggctccacagcctaccgc
acaggggacatggggatctacatctcgcggatcgcagagggaggggcggcccacagagac
cgcacactccgagtaggggacagggtcatcaccatcaatggtgtagacatgacagaggcc
aggcatgaccaggcagtagcgctgcttaccggcacctctcccacaattgctctcctggtg
gagcgtgaccaggccgagccgggcaccgcagggggctccccgggcctgtcccgtgcccgc
gcccactcccccccacctccagagccctctgactcacccgaccaggaagagggcaacgac
gactcgagcctcttgccacacgggaaccacctgagccagccgctggaggacgaatacccc
atcgaggaagtggcgttggtgaaagcgggcggccccctgggactgagcatcgtgggaggc
agtgatcacgccagtcacccgttcggcatcaacgagcctggcgtcttcatctctaaggtg
atctcccatggcttggcgtgtcagagtgggctgcgggtgggggacaggatactggaggtg
aacaccaccgacctgcgccacgccacccaccaggaggctgttagagccctgctctccaac
aagcaggagatccgcatgctggtgcgcagggacccctcgcctcccgggatggaggagata
gtgatccagaagcagcctggagaaaagctgggcataagcatccgcggcggtgccaagggc
cacgctggcaaccccttcgacgccaccgatgagggcattttcatatccaaggtgagctcc
agcggtgcggcggccagggatggccgtctgcttgtgggcatgcggatcttggaggtgagt
aaccacagcctgctgggcatgacccacacggaggctgtacgcgtgctccgtgccgtggga
gacaccctggtcatgctggtgtgtgacggcttcgaccctggcaacgctgccgctatagag
gcgtcaccgggcatcatcgccaacccgtttgcagcaggcatcgtgcgtaagaacagcatg
gagagcatctcctctatcgaccgagacctgagtcccgaggagatggacatcctacagaag
gaggtggagatggtgcgagagacgtcccagtgggagagagaagagatggagaaggtggag
cgcatgcgcttggagcgtgaggaggatactcgcctgctagaagaggagaccgagaacctg
ggcactgggcctctgaaactggactaccggacgctggccgcactgcccaccaccgctctg
cagaaggtcaacagggcgccctccactgagccccccaggacagacagtcccatgagagac
gccccctactcaccaagcacacaaccggcaagcattcatttcacccctactgcactgcct
gccaaggaggatatctcaccactgagtccctatgagacaaggccaggtgccatccagccc
ctctcccgtggtggcgggcggccgatcacctcgccagccactccggacgggcacagcagt
cccaatcccttccagcatggcccctcccccatcaactctcagacctttgatctgtttggc
cagaggaacaacgtccaacccaatcagccttccccttctccagagcctgagctgaacaac
gaggtgtttgaggatgaggtagagggggacgggggaatgggtatgggtcaggcagccccc
gtctctccccgacccttcctctcctctgactgtcgggactatatgagtctggcagcagtg
ccacgcctctccagagcctccatggacatggttgtaaagactccatcacctgggggcaga
gacaaccaggagcagcgctccttcagggacagacagaagtactttgaaatcgacacgaag
cagcagacgcccgacaccaagcccaaaggccgcgtgtccctggttggagcagacgacctg
aagaagatgagggaggaggaagagaggagattcgagcagcgggcacgggagtacctgatg
gatgaagatgacgaggaggaggatgacctggtgaagcagatgggagtgttgaaggccacg
ggcaaagtgctgctggacggggtggagtacaaggtggagcctgtagccaccccccgcagg
cactgtaacacgccccccagctacagcaccacaccccctagctactgtggcagctcaggg
ccctcgtcagtggatggtaaaggagactaccagaggaattccttagaggagagcttcagg
ctggagcagcagaggcccaactccatgactggtctgatcccagtgtaccctggagagtcg
ggggctcccatccggacggccaaggcagaacggaggcaacaggagcggctgaggatgcag
agtccagagctggccccagccggagacaaggacctctccccttccgagaaacgggctttg
gaagccgagaagagagccatgtggagagcagcaaggatgaagtctctggagcaggatgct
ttgaaggctcagatggtcatcgcaaagtcccgggagggaaagaagcgtggcacactggac
cagctggccgagtcgccctcgcccgcccccacgccatcccccacccctctggaagatttc
agtccacaaggagtgacgtcaccaggcagactgtccctgtcggaaaagaagtttgactac
cgacagtttgctgccattccttcttccaaacccgtatacgacatccagtcccctgacgtg
gtcgatgacattcagttcattgacgatggctccagtaacccagtgcatgctgcggatccc
gggactgaggtgcccactgccacctcggcgctggagatggccctctacagcaacaagcgc
aagctgaggcagggctgctgcagcctggagaccgccgtgcccacataa
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