Salvelinus namaycush (lake trout): 120028079
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Entry
120028079 CDS
T07522
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A-like
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120028079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snh03032
]
120028079
03400 DNA repair and recombination proteins [BR:
snh03400
]
120028079
DNA replication proteins [BR:
snh03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
120028079
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120028079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
120028079
NCBI-ProteinID:
XP_038829164
UniProt:
A0A8U0TTZ8
LinkDB
All DBs
Position
Sna33:1043821..1088770
Genome browser
AA seq
1521 aa
AA seq
DB search
MSKGDGEDFVVKFVDVNGRKTDLAVKAYEAIMELQSEKHLKTIDEEAALQLDHNDKSLFV
FSNFSTPAFHHCKKLGCRVVSPLVVHFCLQHQRCVPKAEQPVYNMAMADITISCTSLDKE
ARADVMDLVQLMGGMVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPIVLPTWVKTCWEKS
QDSLFRHTDLPIEDYVCPVLRGCTVCVTGLSTVERKEVQRLCQQHGASYTGQLKMNECTH
LIVSKPSGQKYEYAQKWNVFCVSLHWLFDSIEKGFCQDESHYTSTPTATSKKKEEFLLGL
SHISVNTSMTVDDTAMTNATVSRLDTPDPIDALDITVCPTDDLLDGCKLYLCGLPGKRLE
KLRRLINIAGGLRLNQPSKDLTHVVMGDQDEDTKTFLAKATHRPHVVTVQWLLDSFSRGS
LLPEGDYHHLACLPPAPAAMAMPAPRTSASHPSSTSSAAPPATPRHKKAEEDMLSQYMDD
DQRVVEMPPPADSNSHRRQSAAAPEPWFSAPDQSNTADGDGAGADTTLQEASKAGLFAGK
RFLLLGFGAEVEAQHSMLVTENCGKVLVGHTRVVVDYTVVPLFGCEVEATVDEVVTDTWL
AMCVEQQCMLELGSHALFSPVPVIEGCSPLRDCVLSVSQFTGAERESLVELAKHLGASVQ
DYFVRMVNQRNGMLASTHLVLQSPEGTKYQAAQKWGLPAVTLRWVLESARTGRRAEEGHF
LVDLPPSPEREEESFVGGPQKHSMLPPLSRIKSPEIPLLGPQRGAAVTPLDMGRFQSKVF
RSVLEQGLPEKDCTTLRGQEGGRKAGGQKDSPALQLDTPSRFLCRDQLFRPTFNVKDALA
ALDTPGGRTQQGQATTPLSEVIRRNLKVALANSTHSHTPDLQALTASPQLSKETHREVEE
QEAAPLAGMMICVSKKLSKKQGELNAIAASLGADFRWSCDDTVTHYIYQGRVGDNTREYR
AVKERGVHVVSQHWLQACAEVQRHVSESLYPFTYNPKMSLNLSQVPPDSSQRSPPATRTS
QLGDLTEAQKNKPEDNAVEDATISHRISEGETDTEQGQDNAERDLSETLEMREKLQRQLQ
EIMSATKMTTGRLSSARLTRQCSGESDSQPHTPDRQARMGRNATGRHTLEALRMSRQAAV
DLNTEPSQSEQIVWDDPTAREERAKLADNLQWPISSSQHSEPLAVPLSHSDHAGHTLRDS
MTDSELVEMAVCDVTDQQMGQRVMTLLVEKPEPDLLTPISPSIAFPLANSPVPPEPQTEE
ESVAEKKPPRFQLSSLIPQERIDYTALIDELGGVVLDKQCFDPSCSHIIVGTPLRNEKYL
AAMAAGKWILHRSYLEACRSVGHFIQEDEYEWGSSSILDVLPSISSQQKRLALAAMRWRR
NLQDRNDQEGSFSGWTVMLNIDQTRESGFRRLLQSGGAKVLPRPSPSLYKETTHLFAEFS
RLKPGDFRVDVPEAMSQGVKCLKPEFIADYLIQEPIPPIEMYYLPEAAQCLPAGTDASRA
TPSHKRKASGDSSKLKKTRLK
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaggagatggagaagacttcgttgttaagtttgtagacgtcaatggacgaaag
acggaccttgctgtcaaggcctatgaggccatcatggagctccagtcagagaagcacttg
aagaccattgatgaggaggcggcgttacagctggaccataatgacaagtctctgttcgtc
ttcagtaacttctccaccccagccttccaccactgtaaaaagctgggctgtcgagtggtg
agtccactagtggtgcacttctgcctgcagcaccagcgctgtgtgcccaaagcagagcaa
cccgtctacaacatggccatggctgatatcactatctcctgcaccagtctggacaaggag
gctagggctgatgtgatggatctggtgcagctgatgggagggatggtctaccgggacctc
aacgtgtccgtcactcacctggtcgccggggaggtcggcagcaagaagtacctggtggcc
gccagcctggggaagcccatcgtactgcccacctgggtcaaaacctgctgggagaaatca
caggacagcctgttcagacacactgacctgcccatagaggactatgtgtgccctgtgctc
cgcggctgcaccgtctgtgtcacaggcctctccacagtggagcgtaaggaggtacagagg
ctctgccagcagcacggtgccagctacacaggacagctcaagatgaacgagtgcacccac
ctcattgtcagcaaaccctctggtcaaaagtacgagtatgcacagaagtggaatgtcttc
tgtgtatctctgcactggctgtttgacagcatcgagaagggcttctgccaggacgagagc
cactacacctccacccccaccgccaccagcaagaagaaagaggagtttctgttggggttg
agtcacatttctgtgaacaccagcatgacagtggatgacacggcgatgaccaatgccacg
gtcagccgtctggacactccagatcccattgatgctctggacatcacagtttgccccaca
gacgacctgctggacggctgcaagctgtacctgtgtgggctgccagggaagcggctggag
aagctgcgtcggctgatcaacatagccgggggcctgcgcttaaatcagcccagcaaggac
ctcacccacgtggtcatgggagaccaagacgaagacaccaaaaccttcctggccaaagcc
acacacaggcctcatgtggtgactgtgcagtggctgctggacagcttctccagaggcagc
ctgctccccgagggggactaccatcacctggcctgtctgcctcccgcccctgcagctatg
gccatgcctgccccccgcacctccgcctcccacccctcttccacctcctcagccgccccc
cctgctaccccccgacacaagaaggccgaggaggacatgctatctcagtacatggatgat
gaccagagagtggtggagatgcctcctccagctgacagtaacagccacagaaggcagagt
gctgcagcgccagagccttggttctcagccccagaccagtctaatactgcagacggggat
ggggccggtgctgacaccaccctgcaggaggccagcaaggcgggcctgtttgcgggaaaa
cgcttcctcctgttgggcttcggggctgaggtggaggcccagcattccatgctggtgacg
gagaactgtgggaaggtgctggtggggcacacgcgggtggtggttgactacactgtggtg
cccctgtttggctgtgaggtagaggccactgtggatgaggtggtcactgatacctggctg
gcaatgtgtgtggagcagcagtgtatgttagagctgggctcccacgcccttttcagccct
gtgccagtgatagagggctgctccccgctcagagactgtgtcctctcagtcagccagttt
actggggcagagagggagtccctggtagagctagccaaacacctgggagccagtgtccag
gactactttgtgcgcatggtcaaccaaaggaacggcatgctggccagtacccacctagtg
ctgcagagccccgagggcaccaagtaccaggcggcccagaagtgggggctgcctgccgtc
accctgcgctgggtgctggagtctgccaggacgggccggagggcagaggaggggcacttc
ctggtggacttgcctccttctccagagagagaagaggagagttttgtggggggcccccag
aagcattccatgctcccccccctgtcccgtatcaagtccccagagatccccttgctgggc
ccccagaggggggcagcagtcacccccctggacatgggccgcttccagagtaaggtgttc
cgctccgtgctggaacaaggcctgccagagaaggactgtaccaccctgagaggccaggag
gggggcaggaaagcaggggggcagaaagactccccggcgctgcagttggacactccctcc
cgcttcctttgccgagaccagctcttcagacccaccttcaacgtcaaggatgcgttagcg
gcgttggacacgccagggggcaggactcagcagggtcaggccacgaccccgctgtcagag
gtcatcaggaggaacctgaaggtggccctggccaacagcacccacagccacacccctgac
ctccaggctctcacagctagcccccagcttagcaaggagacacacagagaggtggaggag
caggaggctgctcccctggctggcatgatgatctgcgtaagtaagaaactgagcaagaag
cagggagagctcaatgccatcgctgcctcactaggagctgacttcaggtggtcgtgtgac
gacacggtgactcactacatctatcagggtcgtgtgggggacaacacgcgggagtacagg
gctgtgaaggagagaggggtgcatgtggtgtcccagcactggctgcaggcgtgtgctgag
gttcagaggcacgtgtctgagtctctctacccgttcacctacaaccccaaaatgagcctg
aacctcagccaggtgcctcctgacagtagccagaggtctccccctgccacccgtacctca
caacttggagacctcactgaggcccaaaagaacaagcctgaagacaatgcagtggaagac
gccactatttcccaccgcatcagtgaaggagagactgacacagagcagggccaggacaat
gcagagagagacctgtctgaaaccctggagatgagggagaaactccagaggcaactgcag
gagatcatgtcagccaccaagatgactactggccggctctcctcggcccgcctcacccgc
cagtgctccggggagtccgactctcaaccccatacccccgacaggcaggcccgcatgggc
cgcaacgcaaccggccgacacaccctggaggcactgaggatgtctcgtcaggcagccgtg
gacctgaacacagagccgtctcagagtgagcagatcgtgtgggacgatcccacagcccgg
gaggagagagccaagctggctgacaacctgcagtggcccatcagctcctcccagcactct
gaacccctagctgtacccctctcccactctgaccacgccggacacaccctcagggactcc
atgaccgactctgagctggtggaaatggcggtgtgtgatgtcactgaccagcagatgggt
cagagagtgatgaccctgctagtggagaagccagagcctgacctcctcacccctatatcc
cctagcatcgccttccctctcgccaactctcccgtgcccccagagccacagactgaagag
gagagtgtggcggagaagaagcctcctcgattccagctgtcctcccttatcccccaggag
aggatagactacaccgccctcatagacgagctgggtggtgtggtgctggacaagcagtgc
tttgaccccagctgctcccacatcattgtggggacccctctgaggaatgagaagtacctg
gcagccatggccgcggggaagtggatcctgcaccgctcctacctggaggcctgtcgctcc
gtgggacacttcatccaggaggatgagtatgagtggggcagtagctccatcctggatgtg
ctaccgtccatcagctcccagcagaagaggctggcgttggccgccatgcgctggaggagg
aacctgcaggaccgcaatgaccaggagggatcgttcagcggttggaccgtcatgctgaac
atcgaccagaccagagagtcagggttcagacgactcctgcagtctggtggagcaaaggtt
ctccccaggccctctccatctctgtacaaggaaaccacccacctgtttgcagagttcagt
cggttgaagccaggagacttccgggtggacgtgccagaggccatgtcccagggggtcaaa
tgcctaaagccagagttcattgcagactacctcatccaggagcctattccaccaatagag
atgtactatctgcctgaagctgcccaatgtctgccagcgggcacagatgccagccgcgcc
acaccctcccacaagcgcaaagcatcaggagattcctcaaagttgaagaagactcgcctc
aagtaa
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