Salvelinus namaycush (lake trout): 120028098
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Entry
120028098 CDS
T07522
Symbol
ptbp2a
Name
(RefSeq) polypyrimidine tract-binding protein 2 isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120028098 (ptbp2a)
Spliceosome [BR:
snh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
120028098 (ptbp2a)
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
GlcNAc-1_reg
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
120028098
NCBI-ProteinID:
XP_038829188
UniProt:
A0A8U0TUT7
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Position
Sna33:complement(16362967..16378947)
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AA seq
524 aa
AA seq
DB search
MDGIGDVAVGVKRGSDELLSSSLYNSGSDMSSISDGTSNGSDSKKLRVEDRMEAPPSRVL
HIRKLPNETSETEVIALGLPFGKVTNILTLKGKNQAFLELGTEEAAITMVNYYSTVTPHV
RNVPVFIQYSNHKELKTDAGNQRAQAVLQAVSAVQGGGTPTSGSDLALTAASSPVLRIII
DNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFNDPSTAQQAKIALDGQNIYN
SCCTLRIDYSKLVNLNVKYNNDKSRDYTRPELPAGDGQPAMDPNMAAAFQGKDSNSLLGK
IPGALSPLNAAAAAAAAAGRVALSGHSGSSGVLLASNLNEEMVTPQSLFTLFGVYGDTQR
VKILYNKKDSALIQMADGSQAQLAMSHLNGQKMYGKVIRVALSKHTSVQLPRDGLDDQGL
TKDFTNSPLHRFKKPGSKNFQNIFPPSTTLHLSNIPTDVTEEDLRLLFSNAGGTVNAFKF
FQDHKMALLQMSTVEEAIQGLIDLHNYNMGDNHHLRVSFSKSSI
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggacggtattggagatgttgcagttggcgtaaagagaggatcagatgagctgctgtca
agcagtctctacaacagtggctctgacatgagcagtatcagtgatggtacgtccaacggg
agtgacagtaaaaaactgagagtggaagacaggatggaggctcctccttctcgtgtgttg
cacatcagaaaactgcccaacgaaacttcagaaacagaggtcattgccctggggttacct
ttcgggaaggtcaccaatatcctgactctgaaggggaaaaaccaggctttcttggagctg
gggacagaggaagcggcaattaccatggtcaactactactctactgtgacaccgcatgtt
cgtaacgtccccgtattcatccagtactccaaccacaaagaactcaaaacagacgccgga
aaccagcgggcccaggcggtcctgcaggcggtgtcagcggtccaaggaggcggtacccct
acatcgggttcagatctggctctaacagctgcatccagccctgtgctcagaataatcatc
gacaacatgttctacccagtcactctggatgtgttgcagcagatcttctcaaagttcggc
acggtcatgaagataatcacattcaccaagaacaatcagttccaggccctgctgcagttc
aacgacccatctaccgcacagcaagccaaaattgccctggatggtcagaacatctacaac
tcgtgctgcacgctccgcatcgattactccaagctggtcaacctgaacgtcaagtacaac
aacgacaagagccgtgactacacccggccagagctccccgccggggatggacagcctgcc
atggaccccaacatggctgctgcctttcaaggcaaggactccaactctctgcttggtaag
atcccaggtgccctgagcccgctgaatgctgcggcggcggcggctgctgctgcaggaagg
gtggctctgtctggtcactctggctccagcggtgtgctcctggcctccaacctcaatgaa
gagatggttacgccccaaagtctgtttactctcttcggggtctatggggacacccagagg
gtgaagattctttacaataagaaggacagtgctctgatacagatggccgatggcagtcaa
gcccagctagcgatgagtcacctgaacggtcagaagatgtatgggaaggtcatcagggtg
gctctgtccaagcacacctcagtgcagctgcccagggatggactggatgaccagggcctc
accaaggacttcaccaactcccccctgcaccgcttcaagaagcccggctccaagaacttt
cagaacatcttccctccctccaccaccctccacctctccaacatcccaacggacgtaact
gaagaagacctgagactactgttctccaacgccgggggcactgtgaacgcattcaagttt
ttccaggatcacaaaatggcgctgctccagatgtcgacggtggaagaggccatccagggt
ctgattgacctccacaactacaacatgggtgacaaccaccacctgagagtgtccttctcc
aaatcctccatctaa
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