Salvelinus namaycush (lake trout): 120028116
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Entry
120028116 CDS
T07522
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120028116
09123 Folding, sorting and degradation
03018 RNA degradation
120028116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120028116
03041 Spliceosome [BR:
snh03041
]
120028116
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120028116
mRNA degradation factors
5'-3' decay
Lsm complex
120028116
Spliceosome [BR:
snh03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120028116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
120028116
NCBI-ProteinID:
XP_038829226
UniProt:
A0A8U0PNP4
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Position
Sna33:33881558..33885844
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AA seq
91 aa
AA seq
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MAATPATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcagccactccagctacaaatccgtcacagttgctcccacttgagctcgtggacaaa
tgtataggttccagaatccatatcgtcatgaagaacgacaaagaaattgttggcaccttg
ttgggtttcgacgattttgtcaacatggtgctagaggacgtgacagaatttgaaatcaca
ccggagggaaggaggatcaccaaactggatcagatactactcaacggtaacaacatcacc
atgctcatacctggaggtgaagggcctgaagtataa
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