Salvelinus namaycush (lake trout): 120028273
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Entry
120028273 CDS
T07522
Name
(RefSeq) pre-mRNA-processing-splicing factor 8-like
KO
K12856
pre-mRNA-processing factor 8
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120028273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120028273
Spliceosome [BR:
snh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120028273
Complex C
U5 SnRNP specific factors
120028273
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
120028273
NCBI-ProteinID:
XP_038829376
UniProt:
A0A8U0PNY8
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All DBs
Position
34:complement(20387752..20413096)
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGIHPPAQVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDAEEDSSVAEWLYEHQPLKDTNKYVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPEDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETMEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
ATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGGKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTSHAKIMADNPAWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcattcccttatagaggggtacctggtggaatgcccccaggtatccatccc
ccagcccaggttccagattacatgtctgaggaaaaactgcaagagaaagccagaaaatgg
cagcagttgcaggcgaagcgctactctgagaagaggaagtttgggtttgttgacgcccag
aaggaagacatgccacctgagcatgtccgtaagatcatcagggaccacggtgacatgacc
aacaggaagttccgtcacgacaagagggtctacctgggagccctgaagtacatgccccac
gcggtgctgaagctactggagaacatgcccatgccttgggagcagatcagagacgtgcct
gttctataccacatcaccggagccatttcctttgtcaacgagatcccctgggtcatagag
cctgtctacatcgcccagtggggcgccatgtggatcatgatgcgtcgtgagaaaagggac
cgtcgtcacttcaagcgtatgcgtttccctccctttgatgatgaggaacctccgctggac
tacgctgataacatcctggacgtggagccgctggaggccatccagatggagctggatgca
gaagaggactcctccgtggcggagtggctctacgaacaccagccccttaaggacaccaac
aagtatgtgaacgggaccacgtacaggcgttggcagttcaccctgcccatgatgtccacg
ctgtaccgtctggccaaccagctgctgactgacctggtggactacaactatttctacctg
tttgacctgaaggccttcttcacctccaaggctctcaacatggccatccctgggggaccc
aagtttgaacccctagttagggacatcaacctccaagatgaagactggaacgagttcaac
gacatcaacaagattatcatcagacagccaatcaggacggagtacaagattgccttccca
tacctgtacaacaaccttccccaccacgttcacctcacctggtaccacactcccaacgtg
gttttcatcaagactgaggatcctgatttgccagcgttctactttgaccccctgatcaac
cccatctcccacagacactcagtcaagagtcaggagcctctgccagaggatgacgaggag
tttgagcttccagagtacgtggagcccttcctgaaggagacgcccctctacacagacaac
acagccaatggaatcgctctgctctgggcgccacgccccttcaatctgcgatctgggagg
accaggcgggccatcgacatcccactcatcaagaactggtatcgtgagcactgcccggcc
ggccagccagtgaaggtgcgtgtgtcttaccagaaactgctcaagtactacgtactcaac
gctctcaaacacagaccacccaaggcccagaagaagaggtacttgttccgttccttcaaa
gccaccaagttcttccagtcgactaagctggactgggtggaggtgggcctgcaggtgtgc
agacagggctacaacatgctcaacctgctcatccaccgcaagaacctcaactacctgcac
ctggattacaacttcaacctcaagcctgtcaagaccctcaccacaaaggaacgtaagaag
tccaggttcgggaatgccttccatctgtgcagagaggtgctgcgtctcagcaagctggtg
gtggacagccatgtacagtacagactgggcaatgtggatgctttccagttgtcagacggg
ctgcagtacatctttgcccatgtgggccagctgactggcatgtaccgctacaagtacaag
ctgatgagacagatccgcatgtgcaaggacctcaagcacctcatctactaccgcttcaac
actggtccggtgggtaagggtccaggctgtgggttctgggccccaggatggagggtatgg
ctgttcttcatgaggggcatcacccccctgctagagagatggctcggcaacctgctggcc
aggcagttcgaaggtcgtcactccaagggcgtggcaaagactgtgacgaagcagcgcgtg
gagtcccactttgacctagagctgcgtgcggccgtgatgcacgacatcctggacatgatg
cctgagggcatcaagcagaataaggccagaaccatcctgcagcacctctctgagtcgtgg
cgctgctggaaggccaacattccctggaaggtcccaggcctgcccacccccatcgagaac
atgatcctacggtatgtgaaggccaaagctgattggtggaccaacacggcccactataac
cgcgagcgaatcaggcgcggtgccaccgtggacaagacggtgtgcaagaagaacctgggc
agactgacccgtctgtacctgaaggctgagcaggagaggcagcacaactacctgaaggat
ggtccatacatcacagcagaggaggctgtggccatctacaccaccacagtccactggctg
gagagcagacgcttctcccccatccccttccccccgctgtcctacaaacacgacaccaag
ctgctcatcctggccctggagaggctcaaagaggcctacagtgtgaagtccaggctgaac
cagtcccagagagaggagttggggctgatagaacaggcttatgacaaccctcacgaggcc
ctgtccagaatcaaacgtcacctgctcacacagagagccttcaaggaggtgggcatagag
ttcatggacctgtacagtcacctggtgcctgtgtatgacgtggagcccctggagaagatc
acagatgcctacctggaccagtacctgtggtatgaggctgacaaacgacgtctctttccc
ccttggatcaaaccagctgacacagagcctcctccactccttgtctacaagtggtgccaa
ggcatcaacaacctgcaggatgtgtgggagacgatggagggagaatgtaacgtgatgctg
gagtctcgctatgagaagatgtatgagaaaatagatctgacgctgctcaacagactgctg
cgtctcatcgtggaccacaacatcgctgactacatgaccgccaagaacaacgtggtcatc
aactacaaggacatgaaccacaccaactcgtacggtatcatccgtggtctgcagtttgcc
tcgttcatcgtgcagtactacggcctggtcatggacctgttggtgctgggcctccaccgg
gccagtgagatggccggaccccctcagatgcccaacgacttcctgtccttccaggataca
gccacagagagcgcccaccccatccgcctctactgcagatacattgaccgcatacacata
tttttcagattctcagctgatgaggccagggacctgatccagaggtacctgacggagcac
cctgaccccaacaatgagaacattgtgggctacaacaacaagaagtgctggcccagagac
gccaggatgagactgatgaagcacgacgtcaacctgggtcgtgctgtgttctgggacatt
aagaaccgcctgcctcgctctgtgaccacggtccaatgggagaacagctttgtgtccgtc
tacagcaaagacaaccctaacctgctcttcaacatgtgtggcttcgagtgccgcatcctg
cccaagtgtcgcaccagctacgaggagttcacccacaaggacggcgtctggaacctgcag
aacgaggtgaccaaagagcgtacggcccagtgtttcctgcgtgtggatgatgagtccatg
cagcggttccacaacagagtccgacagatcctcatggcctcaggatccaccaccttcacc
aagattgtgaacaagtggaacacagctctgataggtctgatgacgtacttccgcgaggcg
gtggtcaacacccaggagctgctggacctgctggtgaagtgtgagaacaagatccagacc
cgtatcaagattggcctcaactccaagatgcccagtcgcttcccccctgtcgttttctac
acccccaaggagctgggagggctgggcatgctgtccatgggacacgtcctcatcccacag
tcggatctgaggtggtcgaagcagactgacgttggcatcacccatttccggtccggtatg
agccacgaggaggaccagctgattcctaacctgtaccgttacatccagccctgggagagt
gagttcatcgactcccagagagtctgggcagagtacgccctgaagagacaggaggctatc
gcacagaacaggcgtctgaccctggaggacttagaggactcttgggacagaggtatcccc
cgtatcaacaccctgttccagaaggacagacacacgctggcctacgacaagggctggagg
gtccgcactgacttcaaacagtaccaggttctgaagcagaacccgttctggtggacccac
cagcggcacgacgggaagttgtggaacctcaacaactacaggacagacatgatccaggct
ctgggaggggtggagggcatcctggaacacacgctcttcaaaggaacgtacttccccacc
tgggagggtctcttctgggagaaggccagtggctttgaggagtccatgaaatggaagaag
ctgaccaacgcccagagatctggtctgaaccagatccccaaccgtcgcttcaccctctgg
tggtctcccaccatcaacagggccaacgtgtacgtgggtttccaggtgcagctggatctg
accgggatcttcatgcacggaaagatccccactctgaagatctccctcatccagatcttc
agggctcacttgtggcagaagatccacgagagtgtcgtcatggatctctgtcaggtgttt
gaccaggagctggatgccctggagattgagaccgtgcagaaggaaactattcaccccagg
aagtcctacaagatgaactcctcctgcgccgacatactactcttcgcctcctacaagtgg
aacgtctcacgcccctcgctgctcgctgactcaaaggacgtgatggacagcaccaccacc
cagaagtactggatcgacatacagcttcgctggggagactacgactctcacgacattgag
cgctacgccagagccaagttcctggactacaccaccgacaacatgagcatctacccctcc
cccaccggggtgctcatcgccatcgacctggcctacaacctccacagtgggtacggtaac
tggtttccgggaggcaagcctcttatccagcaggccatggctaagatcatgaaggccaac
cctgctctgtacgtcctgagggagcgcatccgtaagggactgcagctctactcctcagag
cccactgagccctacctctcctcccagaactacggagagctcttctccaatcagatcatc
tggtttgtggacgacactaacgtctaccgtgtcaccatccacaagacgtttgagggtaac
ttgaccaccaagcccatcaatggagccatcttcatcttcaaccccaggacaggtcagctc
ttcctcaagatcatccatacctctgtgtgggccggacagaaacgtctgggacagctggct
aagtggaagacagctgaggaggtggctgctcttattcgttccctacctgtggaggagcag
cccaaacagatcattgtcaccaggaagggcatgctggatccccttgaggtgcatttgctg
gacttccccaacatcgtgatcaagggctctgagctgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctaatcctgaaggccaccgagcctcagatggtcctcttc
aacctgtacgacgactggctcaagaccatctcctcctacaccgcattctcacgtcttatc
ctgatcctaagggcgctccatgtgaacaacgaccgtgccaaggtgatcctgaagcctgat
aagaccaccatcacagagcctcaccacatctggcccacgctgaccgacgaggagtggatc
aaggtggaggtgcagcttaaagacctcatcctggccgactatggaaagaagaacaacgtc
aacgtggcgtctctgacccagtctgagatccgtgacatcatcctgggcatggagatctct
gctccgtcccagcagcgccagcagattgctgagattgagaagcagaccaaggagcagtcc
cagctcaccgccacgcagacacgcacagtcaacaaacacggagacgagatcatcacctca
acaacctccaactacgagacacagaccttctcctccaagacagaatggagagtcagggcc
atctctgctgccaacctgcacctgaggaccaaccacatctacgtgtcgtctgatgacatc
aaggagacaggctacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagacctgcgagcccagattgcaggttacctgtacggcaccagtccccctgacaacccc
caggtgaaggagatcaggtgtatcgtcatggtaccccagtggggaactcatcagaccgtc
cacctacccaatcagctgcctggtcacgagtacctcaaggagatggagcccctgggttgg
atccacacccagcccaacgagtctccccagctctccccccaggacgtcaccagccacgcc
aagatcatggctgacaaccccgcctgggacggagagaagaccatcatcatcacctgcagt
ttcactcctggctcatgcactctgacggcctacaagctgactcccagtgggtacgagtgg
ggcagacaaaacacagacaagggcaacaaccccaagggctacctgccctcccactatgag
agggttcagatgcttctgtctgaccgcttcctgggcttcttcatggtgcctggacaggtt
tcctggaactacaacttcatgggtgtccgccacgaccccaacatgaagtatgacctgcag
ctgtccaatcccaaggagttctaccacgaggtccatcgcccctctcacttcctcaacttc
gcctccctgcaggagggagagatctacaacgcagacagagaggacatgtacggttga
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integrated database retrieval system
