Salvelinus namaycush (lake trout): 120028450
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Entry
120028450 CDS
T07522
Name
(RefSeq) Down syndrome cell adhesion molecule homolog
KO
K06767
Down syndrome cell adhesion molecule
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120028450
Cell adhesion molecules [BR:
snh04515
]
Immunoglobulin superfamily
DSCAM family
120028450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
Ig_2
ig
Ig_DSCAM-DSCAML_C
V-set
Ig_5
C2-set_2
Pur_ac_phosph_N
C1-set
V-set_CD47
Sp38
Interfer-bind
C2-set_3
fn3_2
ARM_TT21_4th
DUF4446
Motif
Other DBs
NCBI-GeneID:
120028450
NCBI-ProteinID:
XP_038829591
UniProt:
A0A8U0TVP9
LinkDB
All DBs
Position
Sna34:24347865..24469823
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AA seq
1819 aa
AA seq
DB search
MRGNVAVFKCIIPASVEAYVTVVSWEKDTVSLSSGPRFLITTTGALYILDVQNEDGLYNY
RCTTRHRYTGETRQSNSARLFVSDPTNSEPGILDGFDRREVMASHRVELPCKASGHPMPK
YRWLKDNSPLEPDTRFRQSVTGLLIESAQPTDSGTYVCEVWNSYGNAEVVGRLLVKQPLK
AVVSPRKVKGSVGSKVSLHCSVSGSDEYELSWYRNGEIIYPGNNVRITGISRENLIMEGM
AKSDGGAYQCFTRKNKMSAQDFVQVILEDGTPKILSSFSEKVVNPNEPVFLVCNVKGTPP
PSCTWNLDDDPVIKDSHHHPGHYETHEGHVVSQLNITHTKEVDGGVYRCTCRNSAGAVYH
QARINVRGAASIRPMKNITAIAGRDAYVHCRVIGYPYYSIKWYKNSHLLPFNHRQRAFEN
NGTLKLSNVQELDQGEYNCRVLVKPHQETNQSVHLNVKVPPYIQPFAFQRFSIGQRVFIP
CVVMSGDQPLDITWQKDGRPIPASLGVTIDNIEFTSSLRISNLSPDHNGNYTCIARNEAA
AVEHQSQLIVRVPPQFVVQPTDQDGIYGKTVTLNCSAEGYPRPTLVWKHSKGNGVPQFQP
IALNSGSRIQLLVNGSLLIKHVLEEDSGYYLCKVSNDVGADVSKSMYLTIKIPAMITSYP
NTTMATVGQQKEMSCTAHGEKPIMVRWEKEERIINPETSRYTVVVKEVADEVISTLKILP
TVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEVEIREVRDRTIALRWTMGFDGNSP
ITGYDIECKNKSASWNSAQITKDVSPQLNQATIIELHPSSTYNIRIFAKNDIGKSDTSNE
LTITTDEAAPDGPPQEVQLEATSPQSIKVTWKAPHKHLQNGVIRGYQVGYREYSSGGSFQ
FNIISMDTTGESSESITLDNLRKFTEYGVVVQAANRAGTGPSSQEVITKTLEDVPSRPPE
NVLAMAKSPEVISLSWLTLPKEALNGNLQGYRVIYWANLPDGELGEIRNVTTSYPSLELD
GLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAGVKSAAATSSVVFVSWLPPL
KLNGIIRKYIVFCSNLHPTVMSEFEASPDVYFYRVPNLARNRKYSIWVVAVTAAGRGNSS
ETITVEPRAKAPARILTFNGTVTTPWMKDIILPCKAVGDPTPTIKWLKGSNGTPAPVLID
GRRSVHSNGSFIIRTVKAEDSGNYSCVASNNWGSDEITLNLQVQVPPDQPRLTVTKTTTT
SITLSWIPGDNGGSSIRGYILQYSEDNSEQWGSFPISPSERSYRLENLKCGTWYKFTLTA
QNGVGPGRISEIIEAKTHGKEPQFAKEHELFASINSTRVRLNLIGWNNGGCPITSFTLEY
RPVETAMWTMAQRTSLTKSYILYDLAEATWYELQMKVVNSAGFAEKKITFATLNADGSTI
PPLLKTVDPITDNMSGNEGLKMMVTITCILVAAVMVFILLMVLKRRRREQRLKRLRDAKS
LAEMLMSKNTRTPDTSNKQQAMRMHIDIPRAQLLIEERDTMETIDDRSTVLLTDNDFGET
SKQKSSTVTHTVHYQSLSQATGPLVDVSDARPGTKPTSQSNPTARRTAKAGPAASRNRYA
SQWTLNPPQPPTSSHTLSTDWRLPTPRAAGSVDKESDSYSVSPSQDTDRARSSMVSTESA
SSTYEELARAYEHAKMEEHLRHAKFTITECFISDTSSEQMTAGTNDYTDSLTSSTPSESG
ICRFTASPPKPQDVSRVMNMAAPKAHRPGIQKTRTSWASAGVKSAAATSSVVFVFWLPPL
KLNGIIRKYIVFCSNFTPR
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcaatgtagcggtcttcaagtgcattatccctgcctccgtggaggcttacgtc
actgtcgtatcgtgggagaaagacacagtctcactatcctcaggacctagatttctcatc
acaaccacaggagccttgtatattctggacgttcagaatgaggatggattgtataactac
cgctgcaccacacggcatcgctacacgggcgagaccaggcaaagcaacagcgcccggctt
tttgtgtcagatcccaccaactcagagccggggattctggatggctttgaccgtcgggag
gtcatggcgtcccatcgggtggagctgccctgtaaggcgtcgggccatcccatgcccaag
taccgctggctgaaggacaacagccccctggagcccgatacacgtttccgccagagtgtc
acgggcctgctgatagagagcgcccagcccaccgactctggcacctacgtgtgtgaagtg
tggaacagctatggcaacgctgaggtggtgggccggcttctggtcaagcagcccctgaag
gcggtggtcagcccacgaaaggtgaagggcagtgtgggtagtaaggtgtccttgcattgc
agtgtcagtggctctgatgagtatgaactgtcgtggtaccgtaacggagagatcatctac
cccggcaacaacgtgcggatcacaggcatcagcagggagaacctgatcatggagggcatg
gcaaagagcgacggcggggcctaccaatgtttcaccaggaagaacaaaatgtccgctcag
gattttgttcaggtcattttggaggacggcactccgaagattctgtcctccttcagtgag
aaggtggtcaaccccaacgagccagtcttcttggtgtgtaacgtcaaaggcactccccct
ccctcctgcacctggaacctggacgacgacccggtcatcaaggacagtcaccaccaccct
ggccactacgagacccacgagggccacgtggtcagccagctgaacatcacccacaccaag
gaggtggacggaggggtgtaccgctgcacctgcaggaactcggccggggcggtctaccac
caggctcgaataaacgtaagaggggctgccagcatccgtccaatgaaaaacatcacagcc
atcgcagggcgggatgcgtacgtccactgtcgcgtcattggctacccatactattccatc
aagtggtataagaactcccacctgctcccctttaaccaccggcagcgggccttcgagaac
aacggcactctgaagctgtccaacgtgcaggagctagaccagggagagtacaactgcagg
gtattggtcaaacctcatcaggagaccaatcagagcgtccatctcaatgtcaaagttcca
ccgtacatccagccctttgcattccagcggttctccattggtcaacgtgtcttcatcccc
tgcgtggtaatgtcaggtgaccagcccctggacatcacctggcagaaggacgggcggcca
atccctgccagtctgggggtcaccatcgacaacatagagttcaccagctcactgcggatc
tccaacctgtccccagaccataacggaaactacacctgcattgcacgcaacgaggctgca
gccgttgagcaccagagtcagctcattgtcagggttcctccccagtttgtggtgcagccc
acagaccaggatgggatctatggcaaaactgtgaccctcaactgctctgctgagggttat
ccacgccccaccctggtatggaagcactccaaaggtaacggggttccccagttccagccc
atcgccctgaactctggctcccgtatccagctgctggtcaacggctctctgctcatcaaa
cacgtgctggaggaggacagcggctactacctgtgtaaggtcagcaacgatgtgggagct
gacgtcagcaaatccatgtacctcaccatcaaaattccggccatgatcacgtcgtacccc
aacaccaccatggccacggtgggccagcagaaagagatgagctgcacagcccatggggag
aagcccatcatggtgcgctgggaaaaggaggaacgcatcatcaacccagagaccagccgc
tacaccgtcgtggtcaaagaggtggctgacgaggtcatctccactctgaagattttgccc
actgttcgggaggattctggattcttctcctgccatgccatcaactcctatggtgaagac
agagggatcattcagttaacagtgcaagaacctccggaccctcccgaggtggagatccga
gaggtcagagaccggacaattgccctccgctggaccatgggctttgacggaaacagcccc
atcacaggatatgacattgagtgcaagaacaagtcagcctcgtggaattcagcccagata
accaaagatgtgtccccccagctgaaccaggccaccattatagagctgcacccctcctct
acctacaacatccgcatattcgccaagaacgacatcggcaagagcgacaccagcaacgag
ctcaccatcaccactgacgaagcagcccccgatggccctccacaggaagtacaactggag
gccacctctccacaaagcatcaaagtcacctggaaggccccccacaagcaccttcagaat
ggggtgatccggggctaccaggtgggttacagagagtacagctctggaggcagcttccag
tttaacatcatcagcatggacaccactggggagagcagcgagagcatcaccctggacaac
ctgaggaagttcactgagtatggggtggtggtgcaggcagctaaccgtgctggcaccggc
ccctcctctcaggaggtcatcaccaaaacactggaggatgtcccctcgcgtccccctgag
aatgtcctggccatggccaagtccccagaagtaatctctctgtcctggttgaccctgccc
aaagaggccctcaatggaaacctgcagggctacagagtcatctactgggccaacctgcca
gacggagagttgggagagatcaggaacgtgaccacctcctacccatctctggaactggat
ggtctggagaaatacaccaactacagcatccaggttctggccttcacccgggccggggac
ggggtgcgcagcgagcagatcttcacccggaccaaggaagacgtccctgggcctccagcg
ggagttaagagtgcagccgccaccagctccgtggtgtttgtgtcctggctccctcctctc
aaactcaacggcatcatcaggaagtacattgtcttctgttccaaccttcaccccacggtg
atgagtgagtttgaggcttctcctgatgtgtatttctacagagtgccaaacctggcccgc
aacaggaagtacagcatctgggtggttgccgtgacagccgctgggcgaggcaacagcagt
gagaccatcacagtggaacctcgggccaaggctcctgccaggatcctgacgttcaacgga
acagtgactacaccctggatgaaggacatcattctgccctgcaaggcggtcggagatcca
acccccaccatcaagtggctgaagggaagcaatggtacccctgcccctgttctgattgac
ggacgccgcagtgtccatagcaacggtagcttcatcatccgaacggtgaaagcagaggac
tctgggaactacagctgtgtggccagcaacaactggggctctgatgagatcacgctcaac
ctgcaggttcaagttcctccagaccaaccacgcctcacagttaccaagacaaccaccacg
tcaatcactctgtcctggatacctggggacaacggaggaagctccatcagaggctacatc
ctgcagtactcagaggacaacagtgagcagtggggaagctttcccattagccctagcgag
cgctcgtaccgtctggagaacctgaagtgtggcacttggtacaagttcaccctgactgct
cagaacggagtgggccccggacgcatcagtgagatcattgaagcaaagacccacggaaaa
gagccccagtttgccaaagaacacgagctgtttgccagcatcaattccacccgggtcagg
ctcaatctaattgggtggaacaatggcggctgcccaatcacctcattcaccctggagtac
cgtccggtggagacggcaatgtggaccatggcccagcgcacctcactaaccaagagctac
atcctgtacgacctggcggaagccacctggtacgagctgcagatgaaggtggtcaacagc
gctggcttcgccgagaagaaaatcacattcgccacgctcaacgcagatggaagcactatc
cctcctctgttgaagacagtggaccccatcacagacaacatgtcaggcaacgaggggctg
aagatgatggtgaccatcacctgtatcctggtggctgctgtcatggtcttcatcctcctg
atggtgctgaagaggaggaggagggagcagaggctcaagaggctacgcgatgcaaaaagc
ctggcagaaatgctgatgagtaaaaacacacggacaccagacacatcgaacaaacagcaa
gccatgagaatgcacatcgacatcccccgagcccagctgctcatcgaagagagagatact
atggagactatcgacgacaggtcgacggtgctgctgactgataatgactttggggagacg
tccaaacagaagtcgtccactgtcacgcacacagtccactaccagtccctgtcgcaggcc
accggcccactggtggacgtctccgatgcccggcctggaaccaagcccacatcccagagc
aaccccacagcacgccgcactgccaaagcaggccctgcagccagcaggaaccgatacgcc
agccagtggaccctgaaccccccccaaccacccacctcctcccacaccctgagcacagac
tggagactgcccacaccgcgcgccgccggctctgtggacaaggagagcgatagctacagc
gtcagcccatcgcaggacacagaccgtgcgcggagcagcatggtgtcgacagagagcgcg
tcgtccacgtacgaggagctggcccgagcatacgagcacgctaagatggaggagcacctg
cggcacgccaagttcaccatcacagaatgcttcatctccgacacctcctcagagcaaatg
actgccggcaccaatgactacacagacagcctgacgtccagcacgccgtccgagtcaggc
atctgcaggttcaccgcctccccgcccaagcctcaggacgtcagccgggttatgaacatg
gcagcacccaaggcccacagaccgggtatacagaaaacacgcacatcctgggcctcagcg
ggagttaagagtgcagccgccaccagctccgtggtgtttgtgttctggctccctcctctc
aaactcaacggcatcatcaggaagtacattgtcttctgttccaacttcaccccacggtga
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