Salvelinus namaycush (lake trout): 120028545
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Entry
120028545 CDS
T07522
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120028545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120028545
03019 Messenger RNA biogenesis [BR:
snh03019
]
120028545
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120028545
RNA polymerase I system
120028545
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
120028545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW7_SPT5
KOW5_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
120028545
NCBI-ProteinID:
XP_038829663
UniProt:
A0A8U0TW08
LinkDB
All DBs
Position
34:complement(9197852..9219172)
Genome browser
AA seq
1083 aa
AA seq
DB search
MSDSEDSDFSDNQSEQSSEAEEVDKNEAEEDGQASLSGSDKAAEEEGEDLADEEYDEEEE
EDDDDRPRKKPRHGGFILDEADVDDEYEDEDPWEEGAEDILEKEEAEVSNIDHVVLDEDN
SGSRRLQNLWRDSREEALGEYYMRKYAKQSGNDFPGGSEELSDDITQQQLLPGVKDPNLW
TVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVESYKQTHVKAAID
GIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEPSQ
NTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPAQRLFDAEKIRSLGGDVSHDGDFMI
FEANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETAGKEREHNL
QAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKV
IAGRYEGDTGLIVRVEDNFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELV
QLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIV
KVIDGQHSGREGEIHHIFRGFAFLHCKKLVENGGMFVCKTRHVVLAGGSKPRDVTNFTVG
GFAPRSPSISSPMHPGCGGQQQRGGGGGGQMGRGRGRRDNDLIGQTVRISQGPYKGYIGV
VKDATESTARMELHSTGQIISVDRQRLTTMGAKRHGGMTSTHGRTPMYGSQTPMYGTGSR
TPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRADDDFEFGYDDE
PSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYTAPSPQGSYQ
PSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGY
NPHTPGSNIDQTSCDWVTTDILVRVKDTFLDSQVVNQTGVIRSVTGGMCSVFLQDTEKVV
SISSEHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFLGK
LEL
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagtgaggacagcgacttctctgacaaccagagtgaacaaagcagcgaagcc
gaggaggtggataaaaatgaggcagaggaagatgggcaggcaagtttatctggcagtgat
aaggcagcagaagaggaaggggaagacttggcagatgaggagtatgatgaagaggaggaa
gaggatgatgatgaccgtcccagaaagaaaccaaggcatggaggtttcatcttagatgaa
gctgatgtggatgatgagtatgaagacgaagacccgtgggaggaaggcgctgaggatatt
ttggagaaagaggaagctgaggtgtccaacattgaccatgtggtcctggatgaggacaac
tctggctcccgcaggctgcagaacctctggagagattccagagaagaggccttgggtgaa
tattacatgaggaaatatgccaagcaatcaggaaatgattttcctgggggttctgaggaa
ctgtctgatgacatcacccagcagcagctactccctggcgtcaaggatcctaatctatgg
acggtcaagtgtaagattggagaagagagagcaactgccattgcgttaatgaggaaattc
attgcctatcaattcacagacacgcccctccaaatcaagtcggtagtggctcccgaacat
gtcaaaggttacatctatgtggagtcgtacaagcagactcacgtcaaggctgcaattgac
ggaataggcaacctgaggatgggcttctggaaccagcagatggttcccatcaaggagatg
acagacgtcctcaaggtggtcaaagaggtgaccaacctcaagcccaagtcctgggtccga
ctcaagagaggcctctacaaagatgacattgcccaggtggactatgtggagcccagtcag
aacacgatatcactgaagatgattcccaggatagatttggacagaattaaggcccgcatg
agcatgaaagactggtttgcaaagcggaagaagttcaagagaccagcccagagactcttc
gatgcagaaaagatcaggtcacttggtggggatgtcagccacgatggagacttcatgata
tttgaagctaaccgctacagccgtaaagggttcctcttcaagagctttgccatgtcggct
gtgatcactgaaggcgtgaaacccactctgtcagagctggagaagtttgaggaccagcca
gaaggcattgatctggaggtggtgactgaaaccgcaggtaaggagcgtgagcacaacctc
caggccggggacaatgtggaggtgtgtgaaggggagctgatcaacttgcagggcaagatc
ctgagtgtggatggcaacaagatcaccatcatgcccaagcatgaggacctgaaggatcca
ctggagttcccggcccatgaattgaggaagtacttccgtatgggtgaccacgtcaaggtg
atagcaggccgctacgagggcgacacaggcctcatcgtacgcgtggaggataactttgtc
atcctcttctctgacctcaccatgcacgagttgaaggtcctgccccgggacttgcagctg
tgctctgagacggcgtcaggggtagatgccgggggccagcacgaatggggggagctggtc
caactggacccccagaccgtgggagttattgtcaggctggagagagagacattccaggtc
ctcaacatgcacggcaaggtgctgacggtgcgtcaccaggcagtgaatcggcggaaagac
aaccgctttgctgtggcgctggactctgagcagaacaacattcacgtcaaagacatcgtc
aaggtcatcgacgggcaacactcggggcgtgagggagagatccaccacattttccgcggc
tttgccttcctgcactgtaaaaagctggtggagaacgggggcatgttcgtctgcaagaca
cgccacgtggtgctagccgggggctccaagcctcgagacgtcaccaacttcaccgtggga
ggcttcgctcctaggagtccaagtatcagcagccccatgcatccaggttgtggtggccag
cagcagaggggtggtggaggaggtggacagatggggcgtggccggggcaggagggacaac
gacctgattggacagaccgtccgcatctcccagggaccatacaaggggtacattggagtg
gtgaaggatgccaccgagtcgacagccagaatggagctgcactcgacaggccagatcatc
tctgtggaccgacagcgtctcaccacaatgggagccaagaggcatggaggaatgacttcc
acccacggacgcactcccatgtacggttcccagacccccatgtacgggacaggctcccgt
acccccatgtatggctctcagacccccttacatgatgggagccgtacacctcactacggc
tcgcagactccgctgcatgatgggagcaggacgccggggcagagcggagcatgggacccc
agcaaccccaacacaccgtccagggcggacgatgactttgagtttggttatgatgacgag
ccctcgccgtcccctcagggctacgggggcacgcctaacccccagacccctggctaccca
gaggtgccctcaccccaggtcaatccccagtacaacccccagaccccaggcaccccagcc
atgtacaacactgaacagtactcgccgtacactgccccctccccacagggctcgtaccag
cccagccccagtccccagagctaccatcaggtggcccccagcccagtgggctaccagaac
acacactcaccagccagctaccaccccaccccctcacccatggcataccaggccagtccg
agccccagcccggtaggctacagccccatgacccccggcgccccctcccctggcggctac
aacccccacacccccggctccaacatcgaccagacctcctgcgactgggtcaccaccgac
atcctggtgcgcgttaaggacaccttcctggacagccaggtggttaaccagacgggcgtc
atccgcagtgtcacgggtggcatgtgctccgtcttcctccaggacacagagaaggtggtg
agcatctccagtgaacacctggagcctgtcaccccaactaagaacaacaaggtgaaggtg
attctaggggaggaccgcgaggccacggggatcctactgagtattgacggggacgacggc
atcgtcaggatggagctggatgaccagctgaagattctcaacctccgcttcctgggcaag
ctggagctctga
DBGET
integrated database retrieval system
