Salvelinus namaycush (lake trout): 120028602
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Entry
120028602 CDS
T07522
Name
(RefSeq) SR-related and CTD-associated factor 4-like isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120028602
03041 Spliceosome [BR:
snh03041
]
120028602
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120028602
Spliceosome [BR:
snh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
120028602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120028602
NCBI-ProteinID:
XP_038829739
UniProt:
A0A8U0TW33
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Position
Sna34:complement(40048459..40103322)
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AA seq
925 aa
AA seq
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MDSVNAFNLELFAMIDMKPPISRAKMMSVTKSAIKAIKLYKHVVQIVEKFIKKCKPELKV
PGLYVVDSIVRQSRHQFGVDKDVYGPRFQKNFTQTFQNLYLCPHDDKSKIIRVLNLWQKN
AVFEMDVVQPLLDMATGSFVLTPSPQEDLQPPVSSTSIAAAQHQAQPTVSIAAAQPQSTV
SIATAQHQPLPTVSIAAAQPPVSIAAAAQHQAQPPVSIAAQHQAQPPVSIAAALPQLPPQ
LRNPEALAAVAQLFQSGQGHELQKMLLRFQPGQQTTAMVPNTMADETQTMVPNTVSDQTH
SQMVQGQHNTHHPLFNSHHTHPTEQNNSLAKKLLDRFDYDDEPEEVKKEELDSLVPGNVY
GGQFPGQTPPNTEQQFQGHMMGQPGRQQTPGGGNPGPNKGYSQSQHSAQQNQDQGNPRER
EDPSGRRDGREGRQRGHGRRSRSRSGSRSPRRKRSRSSSRSRKPRHSSQRSGSRSRESRW
NSPRSRSQERKEREKDKDRRQKGLPSIKSQTLGVCTTTLWVGQLDKKTSQQDVMCLLEEF
GQIDSINMIPPRGCAYIVMVHRQDAYRALHKLGRGSFKVNQKTIKIAWALNKGIKATHKK
FWDVERGVTYIPWSKVKMEELEGYREGGMLDADTLCPEWGDKVKELTKPGGLNNGGGVDA
METEGAATAHVQVPPVQPVGSMGGPPGFPGPPPSLTTSGPPLFLPAGFNPTQPPGFPHPV
VGGPGSNKDESGSKDKAGGSGGPSDTPDSQLGAPGGPGPVMSPPGPAVLLGPRPAMLPMQ
PRPGLPPPHLQPRFPPHLPPPNMPPMMMGPRGHNPMFPPRGGPPGGFRMPMGHPSMEDFP
HGPPRHPFQPGPPGEEEGNWEGGRHFRDERPGFGGHDRDGGRFGERGRGFPRGGGGGGRG
GGNGWSVDGPDGRDRFMNRRDRFEW
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggattccgtcaacgctttcaacttggagttattcgccatgattgacatgaagcctcca
atatcacgagcaaagatgatgtcagttactaaatcagcaataaaggctatcaagctatac
aagcatgtcgtccagattgtggaaaagttcatcaagaagtgtaagccagagctgaaggtt
cctggcctatacgtggtggattctatagtccgacagtcccgacaccagtttggagtggac
aaggacgtctatggacccaggttccaaaagaacttcacccagaccttccagaacctctac
ctctgtccacacgatgacaagagtaagatcatccgtgttctcaacctgtggcagaagaac
gctgtgtttgagatggacgtcgtccagcccctgttggacatggctactggctctttcgtc
cttactccctccccccaggaggacctccagcccccagtctccagtacctccatagcagca
gcccagcaccaggcccagcccacagtctccatagcagcagcccagccccagtccacagtc
tccatagcaacagcccagcaccagcccctgcccacagtctccatagcagcagcccagccc
cctgtctctatagcagcagcagcccagcaccaggcccagccccctgtctccatagcagcc
cagcaccaggcccagccccctgtctccatagcagcagccctgccccagctcccaccacag
cttcggaaccctgaagccctggctgccgtggcccagctcttccagtccggacagggacac
gagcttcagaagatgcttctgaggttccagccagggcagcagaccaccgctatggttccc
aacaccatggctgacgaaacccaaactatggttcccaacaccgtgtctgaccagacccac
tcacagatggtccaaggccagcataacacacaccatccactgttcaactcacaccacaca
catcctacagagcagaataactcactagctaagaaactcctggaccggtttgattacgac
gacgaaccagaagaagtgaagaaagaagagttggattccctcgttccaggaaacgtttac
ggtggccagtttcctggtcaaacgccgcccaacacggagcagcaatttcagggccacatg
atgggccagcctgggaggcagcagacacctggtggaggaaaccctggtccgaacaagggc
tacagtcagagccagcactctgcccagcagaaccaggaccagggaaaccccagagaaagg
gaagatccgtctgggaggagggatggtagggaggggagacagcgcggccacggcaggagg
tcacgctccaggtccggctctcgatctcccaggagaaagaggtccaggtcaagctctcgc
tcgcggaagccccgacactcctcccaacgctccgggtctcgttccagggaaagtcgctgg
aactcccctcgctcccgctcgcaggagaggaaggagagagagaaggacaaagaccgtaga
cagaaaggtctgcccagcatcaagagccagacactcggtgtttgcaccacgactctgtgg
gtgggccagctagacaagaagacttctcagcaggacgtcatgtgtttactagaggagttt
gggcagatagactccatcaatatgatccctcctcgtggatgtgcctatatagtgatggtt
cacagacaggatgcctacagagctctacacaaactcggcagaggatccttcaaggtcaac
cagaagaccatcaagattgcgtgggccttgaacaagggtataaaggcgacccataagaag
ttctgggacgtggagcgaggcgtcacctacatcccctggagcaaagtgaagatggaggag
ctggaggggtatagggagggaggcatgctggacgcagacacactctgtccagaatgggga
gataaagtgaaggagctgactaaaccaggaggactgaacaatggaggaggagtggacgcc
atggagaccgagggagctgccaccgcccacgtacaggtgcctccagtccagccagtaggg
tctatgggtggtccccctggattccctggccctcccccctccctcaccaccagtggaccc
cctctcttcttgcccgctggcttcaaccccacacagcctccaggtttccctcatccagta
gtgggtgggccaggaagcaacaaagatgaatctggatctaaagacaaggctggagggagt
ggtggcccctcagacactccagacagccagctgggagctccaggtggaccagggcccgtg
atgagtcctccaggcccagcagtgttactgggtcccaggccggccatgctgcccatgcag
cctcgtccgggactaccaccccctcacctccagccccgcttcccccctcacctccctccc
cccaacatgccccctatgatgatgggccccaggggccacaaccctatgttcccccccagg
gggggccctccaggtgggttcaggatgcccatgggacacccttccatggaggactttcct
cacggaccccccagacatcccttccagccaggaccccccggggaggaagagggcaactgg
gagggtgggagacacttcagggacgagaggccagggtttgggggacatgacagggatggg
gggaggtttggggagcgggggagagggtttcctagaggaggaggaggaggaggaagagga
gggggaaatggttggtccgtagatgggcctgatgggagggaccgcttcatgaaccgacgg
gatagatttgaatggtga
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