Salvelinus namaycush (lake trout): 120028892
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Entry
120028892 CDS
T07522
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03030
DNA replication
snh03420
Nucleotide excision repair
snh03430
Mismatch repair
snh03440
Homologous recombination
snh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120028892
03420 Nucleotide excision repair
120028892
03430 Mismatch repair
120028892
03440 Homologous recombination
120028892
03460 Fanconi anemia pathway
120028892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120028892
03032 DNA replication proteins [BR:
snh03032
]
120028892
03400 DNA repair and recombination proteins [BR:
snh03400
]
120028892
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120028892
DNA replication proteins [BR:
snh03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120028892
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120028892
MMR (mismatch excision repair)
120028892
DSBR (double strand breaks repair)
HR (homologous recombination)
120028892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
120028892
NCBI-ProteinID:
XP_038830093
UniProt:
A0A8U0PSQ0
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All DBs
Position
Sna34:complement(17515916..17574315)
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AA seq
608 aa
AA seq
DB search
MTNMLTMGAIEALTKGSNDLPNPILQIVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLST
QLNPMAEDNRLAPNCICQLKRNVTNVLKDGRRVVVILDMEVVKSADEVAGKIGEPTPYVE
GQSKAPQSAPNPSVHPLQSQNGNYGTMNKGPSREFGGKKAMPPSAMPSTPGGSSKVVPIA
SLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSI
IETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSIADL
EAREKDAILDVIGVCKSVADVTRLTTKNNREVSKRTLNLMDQSCKLVEVTLWGEEAENFD
GSGQPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMDGQSLTE
ARTGGGGGGNTNWKTLTDIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCSKK
VVDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQ
LKDSNEAAFEEIFQQANFHTFIFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMN
IRKMAAAQ
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgactaacatgctgacaatgggagcgatagaggctctaaccaaaggctctaatgattta
ccaaaccccattcttcaaatagtgaacatccgtaaaattgatggaggcagtggaccagcc
cgctttcgtctgatgatgagtgatggacagcactcaatgtcctcgttcatgctctccacc
caactcaacccaatggctgaggacaaccgactggccccaaactgtatctgtcagctgaag
aggaacgtgaccaatgtcctaaaggatggacggcgtgtggtggtcatattagacatggag
gtggtgaagtctgctgatgaggtggctggaaagatcggagagcccacgccttacgtggaa
ggccagagtaaagccccacagtcagcccccaatccctcagtccaccccctgcagtcccag
aatggaaattatggcaccatgaacaaaggtcccagcagagagtttggggggaagaaggcc
atgcctccgtctgcaatgcccagcactcctgggggatcctccaaagtcgtgcccatcgcc
agcctcaacccctaccagtcaaagtggaccatccgagcacgtgtcaccaacaagagcggc
atccgcacctggagcaactctcgtggggacggcaagctgttctctatggagattgtggat
gaaagtggagagatcagagtgactgcatttacccaggaggtggacaagttctacagcatc
atcgagactggcaaggtgttctacatctccaagggatcactgaagatcgccaacaagcag
tactcgtccctgaagaatgactatgagatgaccctaaatggagagtccactatcatcccc
tgtgaggacacccaggacgttcccatggtgcagtgcaacttcgtctccatcgctgacctg
gaggcccgagaaaaggacgccattttggatgtgattggagtgtgtaagagtgtggctgac
gtgacccgcctcaccaccaagaacaaccgtgaggtctccaagaggacgctcaacctgatg
gaccagtcttgtaaactggtggaggtcaccctgtggggagaggaggcagagaactttgat
ggctctgggcagcccatcttggccatcaaaggggccaagctgtcggactatgggggaaga
tctctgtctgcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatac
aagctgcggggctggtatgacaaggagggccactctatggatggccagtctctgacggag
gcgaggacaggtggtggaggaggagggaacaccaactggaagaccctgactgacatcaag
actgagcacctcggacacggagacaaggcagactacttcagctgcattgccaccatagtg
tacatccgtaaggagaactgtctgtaccaggcgtgccctagtcaggactgcagtaagaag
gtggtggaccagcagaacggcatgttccgctgtgagaagtgtgacaaagagttccccaac
ttcaagtaccgactcatcctctctgccaacatagcagactacggggacaaccagtgggtg
acctgcttccaggagagtgctgaagccatcctgggacagaacgctgcttacctagggcaa
ctcaaagactcgaatgaagctgccttcgaggagatctttcagcaggccaacttccacacg
ttcatcttccgcaacagagtcaagctggagacctacaatgacgagtcccggatcaaggcc
acggtgatggaggtgaaacctgtggaccacaaggagtacagcaagagactcatcatgaac
atcaggaagatggctgccgcccaataa
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