Salvelinus namaycush (lake trout): 120028963
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Entry
120028963 CDS
T07522
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120028963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120028963
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120028963
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
HECT type E3
120028963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
WWE
TBCA_PH
Motif
Other DBs
NCBI-GeneID:
120028963
NCBI-ProteinID:
XP_038830171
UniProt:
A0A8U0PQH1
LinkDB
All DBs
Position
Sna34:13082392..13133875
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AA seq
2059 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVAGRLQSEQVKHKTNSPPESRRPKSKASKAA
PSSSSGQSRGHSSRSSSLSLSVASFVLQDDPEAAGTSEREPTGHQSKSEGTTRGLKRSSA
PDLNNTYIPTPAKKSKSHPPPRDHTTEAKKGPAKSSKKRSLAPELPAPTGRSKSGASGAS
PTQKRKKADSLPGLSSTAGSLPNRTDGRSAKPTKLASKSAASAKAGCSTVTDSSSSASTS
SSSSTGANSATATQGARLKQGKDQNKARRSRSASSPSPRRSTRDREQAKAAVSSKFEWAS
RFSPKVNLPKPKLSLPGSSKTETTSKPGPSGLQAKLASLRKSTKKRSESPPAELPSFRRS
TRQKTTGSCASTSRRGSGLGKRGAADARRQEKMADSDNNQDGANSSAARTDEAPQGASGT
ASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGA
SSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHN
FDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHS
KAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVSDSLPLLTQRLTHQ
DKKSVESTCLCFARLVDNFQHEENLLQQVASRDLLTNIQQLLVVTPPVLSSGMFIMVVRM
FSLMCSNCPCLAVQLMKQNIAETLRFLLCGAANGSCQEQIDLVPRSPQELYELTSLICEL
MPCLPREGIFAVDLMLKKGSAQATEGAIWQWRDDRGLWHPYNRIDSRIIETAHQNGEDEI
SLSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPTTGGHQEVRREDARAQLMKED
PELAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIFFADAELLKDVLRNHAVSSHI
ASMLSSQDLKIVVGSLQMAEILMQKLPDVFSVFFRREGVMHQVKNLAESEAFLTSPPKAC
TSGTASLCTTTISTATTTAASNATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLPKR
GPRRPKYSPPRDEDKVDNQAKSPTTTQSPKSSFLASLNPKTWGKLGAQTNSTNSEPSRTA
GVSGLARAPPKDSVSNNRDKIKAWIKEQACKFVARYFNTEKIDGSNPALNVLQRLCTATE
QLSLQMDGGVECLVEICSIVSESDVSSFEIQHSGLVKQLLLYLTSSSDRDLVSRDIRLRR
FLHVFYGCPIPGMEPAGRLEPSENGPLLSLVHKMNNCLSQMEQFPVKVHDFPSGNGNGSR
GSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIREE
DEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQFSLQSEEE
RESTDDEANPLGRAGIWTKTHTIWYKPVRDDEDGTKDAVGGKRGRAQTAPTKTSPRNAKK
QDELWHDGVCPSVASPLEMYLMSEPPESITFDDPSLDVNLLLRVLHSISSYWFYLYDNAV
SKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTRQMLFYV
TAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINREELLKQAESVMQDLGSSR
AMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGSQEGTKYMFSS
RGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWMLRHETSI
SSHDLVNIDPGVAKSIQHLEDIIRQKKRLEQDLSQTRETLQQALESLNMNGCSVEDLGLD
FTLPGFPNIELKKGGKDVPVTIYNLEEYLRLVVYWTMNEGVSRQFESFREGFESVFPLHH
LQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLFDVLSSFDAEQQRL
FLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEI
MRKKLLIAAREGQQSFHLS
NT seq
6180 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccatacagtcgcgggaaggttgcagtcagagcaggtaaaa
cataaaacaaattcccctcctgaaagtagaagacctaaatctaaggcttccaaagccgca
cccagctcatcctctggccagtccagggggcacagctcaagaagtagcagtctgtcactg
tctgtggcctcatttgtgctgcaagacgacccagaggccgcagggacatccgagcgagag
ccaacaggccaccaatccaagagtgaaggcaccacccgagggttgaagagaagttctgca
cctgacctcaacaacacctacatccccaccccagccaagaagtccaaatcccaccctcca
cccagagaccataccactgaggccaagaaaggccctgccaagtcctccaagaagagatcc
ctggctccagagctgcccgcgcccacaggccgcagcaagagcggggcctctggggcctca
ccgacccagaaacggaagaaggctgactccctccccggtctgagcagcactgctgggtcc
ctccccaaccgtaccgacggcagatctgcaaaacccaccaagctggcgtcgaaatcggcc
gcctcagccaaagctgggtgtagcaccgtgactgactcctcctcttctgcctccacctct
tcctcctcctccaccggcgccaacagtgccaccgccacgcagggcgccaggctcaagcag
ggcaaagaccagaacaaggcacgccgctcccgctccgcctccagcccttccccacgccga
agcacccgcgacagggagcaggccaaagccgcagtctcgtccaagtttgagtgggcctcc
cgcttcagtcccaaagtcaacctgccaaagcccaaattgtccctacctggctcctccaag
accgagaccacctccaaacctgggccctcaggactacaagccaaactagcaagtttgagg
aagtccactaagaagcgcagcgagtctcctccagcagagctccccagctttcggcggagc
acacgtcagaagaccacgggctcctgcgccagcaccagtcggcgaggctcaggcctgggc
aagcgcggggcagccgacgctcgccgacaagagaagatggccgactcggacaacaaccag
gacggggccaactcctcggccgcccgcactgacgaggccccgcagggggcttcaggtaca
gcttctagttcagtggccggagctgtagggatgaccacatccggtgagagtgagtccgat
gactctgaaatgggcagactccaagcactgttggaggccaggggtctacccccacacctc
tttgggcccctgggaccccgtatgtcccagctgtttcacagaaccataggcagtggagcc
agctccaaggctcagcagctgctgcagggccttcaggccaccggtgacgagtcccagcag
ctccaggccgccatcgagatgtgccagctgctggtgatgggcaacgaggagacgctagga
ggcttccctgtgaagagcgtggtgccagctctgatcacattgttgcagatggagcataat
tttgacattatgaaccacgcctcccgtgctctcacttacatgatggaggcgctgcctcgg
tcctctgctgtggtcgtggacgccatcccggtcttcctggaaaagcttcaggtgatccaa
ttcattgatgtggcggagcaggccctgactgccttggagatgttgtcaaggcgtcacagc
aaagccatcctgcaggctggtggcctggctgactgtctgctgtacctggagttctttagc
atcaacgcccagaggaacgccctggccattgccgccaactgctgccagagcatcacccct
gacgagttccactttgtctctgattctctgccactgctgacccagagactcacacaccag
gataagaaatctgtcgaaagcacttgtctctgttttgccagactggtggataactttcaa
cacgaggagaacctgctgcagcaggtggcctcgcgggacctgctgaccaacatccagcag
ctgctggtggtcaccccgcctgtgctcagctcgggcatgttcatcatggtggtgcgcatg
ttctccctcatgtgctccaactgcccctgtctggccgtgcagctcatgaagcagaatatt
gcagagactctgcgcttccttctgtgcggagcggccaacggtagctgccaggagcagatt
gacctggtgccccggagcccacaggagctctatgaactcacctcactcatctgcgagcta
atgccctgccttcctagagagggaatctttgctgtggacctcatgctgaagaagggcagt
gcccaggccacagagggggccatctggcagtggagggacgaccggggcctgtggcacccc
tacaaccgcatcgacagtcgcatcattgagacggcccaccagaacggagaggacgagatc
agcctgtccaccctgggccgcgtctacactatcgacttcaactctatgcagcagatcaac
gaggacactggcacagcacggggtatccagaggaaacccaaccccttagccaaccccact
actgggggtcaccaggaggtgaggcgggaggatgcacgggcccagctgatgaaggaggac
cctgagctggccaagtgcttcatcaagaccctgttcggggtgctgtacgaggtgtacagc
tcgtcggccggcccagccgtcagacataagtgcctccgagccatcctcaggatcatcttc
ttcgccgatgccgagctcctcaaggacgtgctgaggaaccacgctgtgtccagtcacatt
gcctccatgttgtccagccaagacctgaagattgtagttggctctctgcagatggctgag
atcctcatgcagaagctgcccgacgtattcagtgtcttcttcagaagagaaggtgttatg
caccaggtgaagaacctggctgagtcagaggccttccttacaagtcccccaaaggcgtgc
accagcggcacagctagcctgtgtaccaccaccatcagcactgcgaccactacggcggcc
tccaacgccaccccagacctgggctcgcctagcttccagcacagcatggacgactcacta
gacctcagtccacaggggcggttaagtgatgtgctgaagagaaaacgtctgcctaagaga
gggccccgaaggcccaagtactctcctcccagggacgaagacaaagtagacaatcaggcc
aagagtcctaccactactcagtcccccaaatcctccttcttggccagtctgaaccccaag
acctggggcaagctgggcgcccagaccaacagcaccaactctgagccctctcgcacggcc
ggggtgagcggcctggcacgtgcccctcccaaggactcagtctccaacaacagggacaag
atcaaggcttggatcaaagagcaggcctgtaagtttgtggcccgctacttcaacactgaa
aaaattgatggcagcaaccccgcactgaatgtactccagagactctgcaccgccacggaa
cagctcagccttcagatggacggtggcgtggagtgcctcgtggagatctgcagcattgtg
tcagagtcggatgtgtcgtcgttcgagatccagcatagcggcctggtcaagcagctgctg
ctctacctgacctccagcagtgaccgtgacctggtcagccgtgacattcgcctcaggagg
ttcttgcacgtcttctatggctgcccgatcccggggatggagccggcaggccgcctggag
ccgtctgagaacggacccctgctgtcactagtgcacaagatgaacaactgcctaagccag
atggagcagttccctgtcaaggtgcacgacttccccagtggcaacggcaacgggagcaga
gggtctcaggccctgaagttcttcaacacacaccaactcaagtgtcagctgcagaggcac
ccggactgtaccaatgtgaagcagtggaaggggggcccggtgaagattgatcccctggcc
ttggtacaggcaattgaacgttacctggtcgtccgaggttacggacgaatcagagaggag
gatgaggacagtgacgatgatggttcagacgatgaaattgacgaatcgctggcggcccag
ttcctgaactctggcagtgtgcgccaccggctacaattctacatcggcgaccacctgttg
ccctacaacatgacggtgtaccaggcagtgcggcagttcagcctgcagtccgaggaggag
agagagtccacggacgacgaggccaacccgctcgggcgggctggcatctggaccaaaacc
cacaccatatggtataagccagtgagggatgatgaggatggtactaaggatgcggtggga
ggtaagaggggccgggcacagaccgcccccaccaagacctcgccccgcaacgctaagaaa
caggacgagctgtggcacgacggtgtgtgtcccagcgtggccagccccttggagatgtac
ctcatgtcggagcccccggagagcatcaccttcgacgacccgtctctggacgtcaacctg
ctgctgagggtgctgcactccattagtagttactggttctacctgtacgacaatgctgtg
tctaaggagatcatccccaccagtgagttcatcaacagtaagctgacagccaaggccaac
cgacagctgcaggaccctctggtcatcatgaccggcaacatccccacctggctcacagag
cttggcaagacctgtcccttcttcttcccgtttgacacacggcagatgctcttctatgta
acagcgtttgatcgtgaccgggccatgcagcgcctcctcgacaccaaccccgagatcaac
caatcagattctcaggacagccgcgtggcgccccgcctcgacaggaaaaagcgaacaata
aaccgtgaggagctgctgaagcaggcggagtcagtgatgcaggacctcggcagctccaga
gccatgctggagatccagtatgagaacgaggtgggcacagggctgggtcccaccctggag
ttctacgccctggtctcccaggagctgcagagggccgaccttgggctgtggaggggtgag
gaggtcaccctgtccaaccccaaaggaagccaagaagggaccaagtacatgttcagctcc
cgagggctgtttgccgttcccttcggcaggacaaccaaaccggcgcacatcgccaaaatc
aagatgaagttccgcttcctgggcaagctgatggccaaggccataatggacttcagactg
ctggacctgcccctggggctgcccttctacaagtggatgctgcggcacgagacatccatc
agctcccacgacctggtgaacatcgacccgggcgtggccaagtccatccagcacctggag
gatatcatccgccagaagaagaggctggagcaggacctctcccagacgagggagaccctg
cagcaggctctggagagtctcaacatgaacggctgctctgtggaggacctgggcctggac
ttcaccctgcctggtttccccaacattgagctgaagaaggggggcaaggacgtccctgtc
accatctacaacctggaggagtacctcaggctggtggtctactggacgatgaacgaaggc
gtgtcccggcagtttgagtctttcagggaagggttcgagtcggtcttccccttgcatcac
ttgcagtatttctaccctgaagagttggatcagctgctttgtggcagcaagtctgagacc
tgggacgtcaagaccctgatggagtgctgtcgtcccgaccacggctacacgcatgacagt
cgtgccgttaggttcctgtttgatgtgctcagcagttttgacgcagagcagcagagactc
ttcctgcagtttgtcacaggaagccccaggctgcctgttggaggtttccgtagtctgaac
ccgccgctgaccattgtgcggaagacttttgagtcaacggagaacccggacgacttcctg
ccctcggttatgacctgcgtcaactacctgaagctgcccgactactccagcatcgagatc
atgcgcaagaaactgttgattgcggcccgagagggccagcagtccttccacctgtcctga
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integrated database retrieval system
