Salvelinus namaycush (lake trout): 120029071
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Entry
120029071 CDS
T07522
Name
(RefSeq) neuronal PAS domain-containing protein 1-like
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120029071
Transcription factors [BR:
snh03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
120029071
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GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
120029071
NCBI-ProteinID:
XP_038830304
UniProt:
A0A8U0TV26
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Position
Sna34:6071185..6096247
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AA seq
781 aa
AA seq
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MATMPFISEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMRTFASQGDPPWCPLLEGENHCSKVRRSCHSLA
TDMFEQHLGAHLLQSLDGFVFVVSSEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHVAPESASSSASTSSLAGTPEPAPSSPLSPGNEPPDRGFF
IRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPAMVPGSARSVRRPMGLVALAHTLPPSTL
NEVRMESQMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDNIRQSHE
DLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYVISRTELPDTPL
DLLQLPESLRVERLKASSSPSEHSPQTRGSSGPQPMKSSVCKGDPDSKLREIYNPGVQSG
DRRKRSLRSDSEGAPAETRRRLEEFRQRERSVSASSDLGSESGGEEREWEHGGDSARVKR
EEGPSKRGEETPMRGGGAHNGRAVIQHLKSVVSSPLSGHPNIKTEHEALAAGGRWTHTHT
SSHIQPPPSHTHTPCGSLNGDSPLTPIPDSSSSSEAPPNGIFTPPSPAMSPPMSGSSPLP
CEERGMLSGGRGCGPDFELLHRLAAGGAAGRVLFHPLALGPQGPQSLYAPSTIRYAPPEL
PHSHPGAEGLRSDHHKGPPAFFPHLQRLAGLPSFSGFSASDNPFNPFCMNGLRGAAGSEE
D
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccatgccgttcatcagcgagggaaagtgcgtgagtgtggagtgggacttccta
cagggactactggccaaaccccccaccctgccttgtttgcagaacctgcggaaggagaag
tctcgtaatgccgctcgttcccgtcgcggcaaggagaactttgagttctttgagctggcc
aagatgctgcctctccccggggccatcaccagccagctggacaaggcctcggtcatccgc
ctcaccatcagctacttgcacatgcgcaccttcgccagccagggagacccgccctggtgc
cccctgctggaaggagagaaccactgcagcaaagtgcgacgctcctgccactctctggcc
actgacatgttcgaacagcacctgggagcacacctgttacagtctctggacggctttgtg
tttgtggtaagctcagagggacgcttcctctacatatcagagactgtttccatctacctg
ggcctctcacaggtggagttgacgggcagcagtgtgtttgactacatccacccagcggac
catgtggagatggcagagcgtctgggcatcaggccccacctgagggccgaggctggctgc
cacgtggcccccgagagcgcgtccagctctgcctccacatcctccctggccgggaccccc
gagcctgccccctcaagccccctctctcctgggaacgaacctcctgaccgaggcttcttc
atccgtatgaagtccaccctcaccaagagaggcctccacgtcaagtcctccggctacaag
gtgatccatgtgaccgggcgaatccgctgtcgccctgccatggtgccaggctccgcccgc
tcggtgcgtcggccaatgggcttggtggcccttgcgcacacactcccgccctccacgctg
aatgaggtgcgcatggagagccagatgtttgtcttccgggtcaacatggatttgcaggtc
acctactgcgagaacaggatctcagagtacatggacctgagcccggcagaggtggtggga
cacacctgctaccacttcatccatgtagaagacctggataacatcagacagagccatgag
gacttgttgaggaagggtcaggtggtgaccgggtactaccgctggctccagaggagaggg
ggttatctgtgggtccagtcctgtgccaccgtctccatcaaccacaaagccccccacgaa
cgcaacgtcatctgggtcaactatgtcatcagtcggacagagctcccagacactcccctg
gatctgctgcagctcccagagagtctgagggtggagcgtctgaaagccagctcctcccct
tcggaacactcaccacaaacccggggctcctcaggcccacagccaatgaaaagctctgtg
tgtaaaggtgaccctgactctaaactgagagagatctataatcccggtgtccaatcaggg
gacaggaggaagcgttcgctgcggtctgactctgagggtgctcccgcggaaacgcggcgt
cgcctggaagagttccgccagagagagcggagtgtgtcagcttcctcagacctgggcagc
gagagcgggggagaggagagagagtgggagcatgggggagacagcgcgagggtcaaacga
gaggaggggccttcgaaacgaggcgaggagacccccatgaggggcggcggggcgcacaac
ggccgtgcggtaatccagcacctgaagagtgtagtgtcctcgcctctctctggccacccc
aacatcaagactgaacatgaggcactggccgcagggggtcgctggacacacacacacacc
tcctcacacatacaacccccaccctcacacacacacacaccctgcggcagcctgaacggc
gacagtcccctcacccctatcccggactcctcctccagcagtgaagccccacccaatggt
attttcaccccgccctcccccgccatgtcccctccgatgtccggctcctcccctctaccc
tgtgaggagcggggaatgttgtctggaggccgagggtgcgggcctgactttgagctgttg
catagactggcagcggggggtgctgcaggacgggtgctgtttcaccccctggccctcggc
ccccaggggccacagagcctgtacgcccccagtaccatccgctatgcgcccccagagctg
ccccactcccaccccggtgctgaggggctgcgctccgaccaccacaagggccccccagcc
tttttccctcacctccagaggctggccggcctgccctccttcagtgggttctctgcctcg
gacaatcccttcaaccccttctgtatgaacggactgaggggggccgcagggtccgaggag
gactga
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