Salvelinus namaycush (lake trout): 120029154
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Entry
120029154 CDS
T07522
Name
(RefSeq) LOW QUALITY PROTEIN: spectrin beta chain, non-erythrocytic 4-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04517
IgSF CAM signaling
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
120029154
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120029154
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
snh04812
]
120029154
Cytoskeleton proteins [BR:
snh04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
120029154
Intermediate filaments
Intermediate filament-binding proteins
120029154
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
TMP_3
Motif
Other DBs
NCBI-GeneID:
120029154
NCBI-ProteinID:
XP_038830387
UniProt:
A0A8U0PSP8
LinkDB
All DBs
Position
34:complement(8489310..8542732)
Genome browser
AA seq
2708 aa
AA seq
DB search
MANASTDLDNAEAQRQLNNNNTRLAGSSGHWETEVTSSKLFECSRIKALAEERDAVQKKT
FTKWVNSHLARVSCRIADLYNDLRDGYMLTRLLEVLSGEMLPRPTRGRMRIHCLENVDKA
LQFLKEQRVHLENVGSHDIVDGNHRLTLGLIWTIILRFQIQVIKIECDDNRETRSAKDAL
LLWCQMKTAGYSEVHIQNFTTCWRDGLAFNALIHRHRPDFIEFHKLIRSNATHNLQQAFN
IAEQNLGLTKLLDPEDVNTENPDEKSIITYVVSYYHYFSKMKALRVEGKRVGKVLDNAIE
GQKMIDRYEALASELLEWIEKTIGIISNQKFANSLTGVQQQLQAFTTYCTIEKPIKFQEK
GNLEVLLFTIQSKLRANNQKPYVPHEGKLISDINKAWERLEKAEHEKGVALRQELIRQEK
LELLAQRFDHKTTMRQAWLNENQRLVSQDNFGYDLPAVEAAMKKHEAIEADISSYEERIG
VVVELAGEMETEGYYDIRRISARKENILGQWSLLKELVVGRKARLEKNLALQKTFQDMVY
MIDWMEDMQVQLLSKDFGKHLLEVDDLLQKHSLQEADITAQADRVQTLNSAALKFTTIEG
YQPCDPQVICNRVNHVSTCLEELKQLAAKRCSELEESQHLWAFFQEVEESEAWIREKSSI
LVAQTCGKDLSSVLRLLQKHKTLAGELLAHRSLLQQTMKKGKQILMEKSFGTGGIQERIM
EVKGEWKRLEDQAAQRLGHLQEALNFFQFSTETDDLLAWLQDAYRLVSSEDFGHDEYSTQ
SLLKKHRGVCEAVDKHRMHVVTLRKHMVVLPLHYRELDEVQSRMGEAEQLYTEVAEVAVL
RQQWLHDALAVYLMFSEVNACEVWIDEKEQWLNKMEVPERLEDVEVIAHRFEGLDQEMNS
LMGRILDVNQIVQQLLDNGHPSSTEVRGCQDHLNSRWNRIVEMVEQKKDHLDSVLRLQNY
LLECAEIKSQIQEKRKAIDATQYVGSDLGGVLALQRRLSTMEGALAVLEPKLLHLQQEAE
ELAISHPAKAMEVLEHFEGISVEWEELKRTLQGCEDSLMVAGRLQQFIQDLDSFLTWLVQ
TQTAAASDELPNALEEAERLINRHAALKEEIGRYEEDYERLQAVNELLEAEEAPLPYAAL
QQWLQKLDVGWNKLLEMWESRREVLVQAHIFHLFLRDVKQAEAFLNNQESALAHVELPTT
VETVEAAIKKHKDFTTTMELNLHRIKAVIEAGESLISQSNIYSDRIKERVDTLANRGNQN
RELAQQWLERLNGQWGLQRLLQDCHELGDWVAEKMLMARDTSRDETQKLHKKWLKHQAFM
AELAQNKEWLEKIEREGQQLIQEKPELSPVVRRKLGEIRECWQDLESTTQAKARQLFEAN
RADLLVQSYTSLDHRLHQLEGQLCYVDQGQDLTSVNKQLKKLQTMECQMEEWYKEVGELQ
VAAASIPQQGQVMDTVGERQAAVETRIVRLIEPLKERRRILLASKEVHQVGRDLEDEILW
VQERLPAATSQEHGSSLQAVQHLMKKNQTLQRELQGHRARVEDVLERANVIASIRSPEAD
CVRAGLEQLSGLWGLLWAETERRQLVLDAMYQAQQYYFDTAEVEAWLSEQELHMMNEEKG
KDEPSTLQLLKKHLVLEQTIEDYAETIGLLSQQCRQLLEMGHPDSEQISKCQSQMDRLYV
SLKDLVEERKSRLEQQYWLYQLNHEVDELEQWIAEREVVASSPELGQDFEHVTILQEKFT
EFASETGSLGQERVTAVNQMVDELIDYGHAEAATIAEWKDGVNEAWADLLELMETRAQML
AASHQLHKFFTDCREILAQIDDKQRRLPEVRARQGGTANTSTLQRLMHSFEHDIQLLVTQ
VRQLQESAGQLRTIYAGQKAEAIAGREQEVMHCWKELLTSCEECRVQITTATDKLRFFGV
VRDQIMWMDSIISQIGTGDNPRDVSSVEVLMNYHQGLKSEVEARSKSVLQCIEMGKTLLA
ARNPAAEEIKEKLDKVVAKQYELSEKWDKHWEVLQHMLEVHQFAQEAVVAEAWLTAQEPF
INSMELGASVDEVEQLIRRHEAFRKAAATWEERFSSLRRLTTVEKMKAEQSKLPPTPLLG
RKVFLDPQETSPARSQGSPLMRRIIYEQAEHRAERPSQEPLPSSVARRLGSTVANYTPIM
NGSSGYRSSLEAWAIPGMGGVVGGVVGVAAGLGTTAMEARGVATNLGTTTAMEVRGVATG
LGTAASEARGLAVGLVTPAVEAKGIAASLVTGAAAAVEVKASQYLRQPKIKHMDDMVTPM
LVACRLEKVVLQEMGREGMGRERLNSEPSSRDHRAGSSRSEPQQRDRDRDSRDSRDSHRE
ARLERQHSSEVLMIQARRDELPQEVWRERAERKERKLERQTSSEQEGHGHEGRRKDRHRT
ERQESSEHDTAKEQSDRRSTEKRSGGQTLFDIVEQLKEREAATVIXALPSLFSPQARGEV
SKVPNGVPEKSSGRPDRPRARDRPKPRRRPRPKDHSAGEATTRRSRSAPEPGMAQSVSPS
VPQPPSHTAHHEGFLFRKLDIETMRKSSNRSWVNLYCVLNKGEIGFYKDAKNTTTPYNNE
PMLNLGHCHCDVTLGYKKKKNVFTLKTKDGSEFLFHAKDEDDLKAWTTNINKSIAEHVEI
AKWGQPQPTTSSTDEGTRRDGSKADNKSERGEKSDRGERPERAERSERSDKGETKSDTKR
SEKSSRKK
NT seq
8127 nt
NT seq
+upstream
nt +downstream
nt
atggccaatgcctccacagacctggacaacgcggaggcccaacgccagctcaacaacaac
aacacccgtctggccggcagctccggacactgggaaaccgaagtcaccagctccaagctg
tttgagtgttcccgcatcaaggccttggcagaagagagagatgctgtccagaagaagacc
ttcactaagtgggtgaactcccacctggcaagagtgtcctgtcgaatcgctgacctctac
aacgacctccgggacggctacatgctcaccaggctgctggaggtcctgtctggggagatg
ctgccgaggcccacgcggggtcgcatgcgtatccactgcctggagaacgtggacaaggcc
ctgcagttcctcaaggagcagagggtccacctggagaacgttggctctcacgacatcgtc
gacggcaaccaccgcctcacccttggcctcatctggaccatcatccttcgcttccagatc
caggtgattaagattgagtgtgacgacaacagggagacgcggtcggcaaaggatgccctg
ctactctggtgccagatgaaaactgctgggtactctgaggtccacatccagaacttcacc
acctgctggagagatggtctcgccttcaacgctctcattcaccgacacaggcctgatttc
attgaattccataagctgatccggtcaaatgccacacacaacctccagcaagccttcaac
attgctgagcagaacctggggctcaccaaactcctggaccctgaagacgtgaatacggag
aacccagacgagaagtcgataataacctatgttgtgtcctactaccattacttctccaag
atgaaagcccttcgagtagagggcaagagagtgggaaaggtgttggacaatgccatcgag
ggccagaagatgatcgatcgatatgaggctctggcctcggagctcctggagtggatcgag
aagaccataggcatcatcagcaaccagaagtttgccaactccttaacgggtgtccagcaa
cagcttcaagccttcaccacctactgcaccatcgagaagcccatcaagttccaggagaag
gggaacctggaagtgctcctctttactatccaaagcaagctcagagctaacaaccagaaa
ccatacgtgcctcatgaagggaaactcatctctgatatcaataaggcgtgggagaggctg
gagaaggcggagcatgagaaaggcgtggccctacgtcaggagctgattcgccaggagaag
ctggagctgctggcccagcggtttgaccacaagaccaccatgagacaggcgtggctcaac
gagaaccagcgcctcgtgtctcaggataactttggctacgacctgccagcggtggaagcc
gccatgaagaagcacgaggccattgaggcagacatctcgtcgtacgaggagcgcatcggg
gtggtggtggagctggctggggagatggagacggagggctactacgacattcggcgtatc
tcggcccgcaaggagaacatcctgggccagtggagcctgctgaaggagctggtggtgggg
aggaaggcccggttggagaagaacctggctctgcagaagaccttccaggacatggtctac
atgatcgactggatggaggacatgcaggtccagctcctgtccaaagacttcggcaagcat
ctgctggaggtggacgacctgctgcagaaacacagcctccaggaagctgacatcacagcg
caggcagatagggtgcagacccttaactcagccgctctcaaattcaccaccattgaaggc
taccagccctgtgacccccaggtgatctgcaaccgggtcaaccatgtcagcacttgcctg
gaggagctcaagcagctggcggccaagcggtgctcggagctggaggagtctcagcacctc
tgggccttcttccaggaggtggaggagtccgaggcctggatccgcgagaagagctccatc
ctggtcgcccagacctgcggcaaggacctgagcagcgtgctgcggctgctccagaaacac
aagaccctggctggggagctgctggcccaccgctccctcctccaacagaccatgaagaag
ggcaagcagatcctgatggagaagagtttcggcacggggggcatccaggagcgcatcatg
gaggtgaaaggggagtggaaaaggctggaggaccaggcggcgcagagactgggccacctg
caggaggcactcaacttcttccagttcagcacagagacggacgacctgctggcctggctg
caggacgcctaccgcctggtatccagcgaggactttggtcacgatgagtactccacccag
tcactgctcaagaagcaccggggtgtgtgcgaggccgtggacaagcaccggatgcacgtg
gtaactctgcgcaaacacatggtggtgctgccactgcactaccgggagctggacgaggtg
cagtcgaggatgggcgaggcggagcagctgtacaccgaggtggccgaggtggccgtcctg
aggcagcagtggctgcacgacgcgctggccgtctacctcatgttcagcgaggtcaacgcc
tgcgaggtgtggatcgacgagaaggagcagtggctcaacaagatggaggttccagagagg
ctggaggacgtagaggtcatagcccataggtttgagggcctggaccaggagatgaacagc
ctgatgggaaggatcctggacgttaaccagatagtgcagcagctcctggacaatggtcac
cccagctctacagaggtcagaggctgtcaggaccacctcaatagcagatggaaccgcatc
gtggagatggtggagcagaaaaaggatcacctggactctgtcctccgtctccagaactac
ctgctggagtgtgctgagatcaagtcccagatccaggagaagcgcaaggccatcgacgcc
actcagtacgtgggcagtgacctgggcggggtcctggccctgcagcgccgactctccacc
atggagggggccctggccgtgctggagcccaagctgcttcacctgcagcaggaggcagag
gagctggctatctcgcacccggccaaggccatggaggtcctggagcacttcgagggcatt
agtgtggagtgggaggagctgaagcgcacgctgcagggctgtgaggactctctgatggtg
gcggggcggctgcagcagttcatccaggacctggactccttcctgacgtggctagtgcag
acgcagacggcggcagctagcgacgagctgcccaacgcgctggaggaggccgagaggctg
atcaaccgccacgcggcactgaaggaggagatcgggaggtacgaggaggactacgagcgg
ctgcaggcggtcaacgagctgctggaggctgaggaggcgccgctgccatatgcggcgctg
cagcagtggctccagaagctggatgtgggctggaacaagctgctggagatgtgggagagc
cggagggaggtgctggtgcaggcgcacatcttccacctcttcctgagggatgtcaagcag
gccgaggccttcctcaacaaccaggagtcagccttggcccatgttgagctgcccaccact
gtggagacggtggaggctgccatcaagaaacacaaggactttaccaccaccatggagctc
aacttgcatcgcatcaaggctgtcatcgaggccggagagagccttattagccagagcaac
atctactcggaccgcatcaaggagcgtgtggacaccctcgctaacagaggcaaccagaac
cgggaattggcccaacagtggctggagaggctcaacggccagtgggggctccagaggtta
ctacaggactgccacgagcttggagactgggtggcagagaagatgctcatggctcgtgac
acgtcccgcgatgagacgcagaagctgcacaagaagtggctgaagcaccaggccttcatg
gccgagctggcccagaacaaagagtggctggagaagatcgagagggagggccagcagttg
atccaggagaagcccgagctgagcccggtggtgcggaggaagctgggggagatccgggag
tgttggcaggacctggagagcactacccaggccaaggcccgccagctgtttgaagccaac
cgggccgacctgctggtgcagagctacaccagcctggaccatcggctgcaccagctggag
ggacaactgtgctacgtggaccagggtcaggacctgaccagcgtcaacaagcagctcaag
aagctccagacgatggagtgtcagatggaggagtggtataaggaggtgggggagctgcag
gtggcggcggcctccatcccccagcagggccaggtcatggacacggtcggcgagcgccag
gccgccgtggagacgcgcatcgtccgcctcatcgagccgctcaaggagcgccggcgtatc
cttctggcctccaaggaggttcaccaagtgggccgggacctggaggacgagatactgtgg
gtgcaggagcggctgcctgccgccacgtctcaggagcacggctccagtctacaggctgtg
cagcacctcatgaagaaaaaccagactctgcagagggagctgcagggccatcgggcgagg
gtggaggacgtcctggaacgagctaatgtcatcgcctccatccgcagccccgaggctgac
tgtgtgcgggcgggcctggagcagctcagcgggctgtggggtctgctgtgggccgagaca
gagagaagacagctggtgctggatgccatgtaccaggcccagcagtactactttgacacg
gccgaggtggaggcctggctcagcgaacaggagctgcacatgatgaacgaggaaaagggc
aaggatgagcccagcaccctgcagctactgaagaagcacctggtactggagcagacgata
gaggactacgctgagacgataggccttctctcccagcagtgcagacagctactggagatg
ggacatccagacagtgagcagatcagtaagtgtcagtctcagatggaccggctgtacgtg
tctctgaaggacctggtggaggagaggaagtctcgtctggagcagcagtactggctctac
cagctcaaccatgaggtggacgagctggagcagtggatcgctgagagggaggtggtggcc
agctcgccagaactgggacaggactttgaacacgtcacgatcctgcaggagaagttcaca
gagtttgcgtcggagacgggcagtctgggtcaggagcgtgtgacggcggttaaccagatg
gtggacgagctgatcgactatggccacgccgaggccgccaccatcgccgagtggaaggac
ggcgtgaacgaggcctgggccgacctcctggagctcatggagacccgggcacagatgctg
gccgcctcgcaccagctccacaagttcttcaccgactgccgcgagatcttggcccaaatc
gatgataagcagcggaggctgccagaggtacgggcgcgccagggtggcactgccaacacc
agcaccctgcagaggctcatgcacagcttcgagcacgacatccagctgctcgtcactcag
gtgaggcagctccaggagagtgcgggtcagctccggaccatctacgccgggcagaaggct
gaggccatcgccggccgggaacaggaagtgatgcattgctggaaggagctcttgacgtcc
tgtgaggagtgccgagtgcagatcaccacggcaacagacaagctgcggttctttggggtg
gtgcgagaccagatcatgtggatggacagcatcatctctcagatcggcacaggggacaat
ccaagggatgtgtcctcagtggaggtactgatgaactaccaccagggcttgaagagcgag
gtggaggcgcgcagtaagagtgtgctgcagtgcatcgagatgggcaagacgctgctggcg
gcgcgcaaccctgctgctgaggagatcaaggagaagctggataaggtggtggccaagcag
tacgagctgtctgagaaatgggacaaacactgggaggtcctgcagcacatgctggaggtg
caccagtttgcgcaggaagcggtggtggctgaggcctggctcacggcccaggagcccttc
atcaacagcatggagctgggcgccagcgtggacgaggtggagcagctcatccgccgccac
gaggccttccgcaaggccgccgccacctgggaggagcgcttcagctcattacgacgcctc
accacggtggagaagatgaaagcagagcaaagtaagctccctcccacccccctgttgggt
cgaaaggtgttcctggacccccaggagacgtcccctgcccggagccagggctcccccctg
atgagacggatcatttacgagcaggccgagcacagagctgaaaggccctcccaggaaccc
ttgccctcctccgtggcccgccgcttgggatccaccgtggccaactacacccccatcatg
aacggctctagtggctaccgcagcagcctggaggcctgggccatccccgggatgggggga
gtggttggaggtgtagtgggggtggcagccggcctgggaacaaccgccatggaggccaga
ggggtagcaacaaatttagggaccacaaccgccatggaggtccgaggggtggcaacaggg
ttggggactgccgcctcggaagccagggggttggcagtaggattggtcacccccgcggtc
gaggccaaagggatagctgcaagcttggtgactggtgcagccgcagcagtggaggtgaaa
gcctcacagtacctccggcagcctaagatcaaacacatggacgacatggtgacgcccatg
ctggtggcctgtaggctggagaaggtggtgctccaggagatggggagggaggggatgggc
agggagaggctgaacagcgagcccagcagcagagaccaccgggcggggagcagccggtcg
gagccccagcagagagatagggacagagacagtagggacagtagggacagtcacagggaa
gccaggctggagcgccagcactccagtgaggtgctgatgatccaggcgcggcgggatgag
ctgccccaggaggtgtggcgggaacgggccgagcgcaaagagaggaagctggagaggcag
acgtccagtgagcaggagggccacggacacgaaggccggaggaaagaccgccaccggacg
gagagacaagagtccagtgaacacgacacagccaaggagcagtcagacagacgttctacg
gagaaaaggtcaggcggccagaccttgtttgacatagtggagcagctaaaagagagagag
gcagcaacggtgatctaagctctgccctctctcttctctcctcaggcccgaggggaggtc
tctaaagtgccgaacggcgtgccagagaagtcttccggacgtccagaccggccgcgagca
cgggaccgccctaagccccggcggagacccaggcccaaggaccactctgcaggagaggcc
accacccggcggtcacgctcggcgccagagccagggatggcccagagtgtgagcccctca
gtcccccagccgcccagccacacagcccaccacgagggcttcctcttccgcaagctggac
atcgagaccatgaggaagagctctaacagatcctgggtcaacctgtactgtgtgctgaac
aaaggagagataggcttctataaggacgctaagaacaccaccacaccttacaacaacgag
cccatgctcaacctcggccactgccactgcgacgtcacccttggatacaagaagaagaaa
aacgtctttacacttaaaacgaaagacggaagtgaatttctgttccatgcaaaggatgag
gatgatctaaaggcctggaccaccaacatcaacaagagcatcgcagagcatgtggagatt
gccaaatggggtcagccccagcctactacctcatccacggacgagggcacgcgccgcgac
ggcagcaaggccgataacaagtcagagcggggagaaaagtcagaccggggggaaaggccg
gagagggccgagcgctctgagaggtcggataagggtgagaccaaatcggacaccaagcgt
tcagaaaagtccagcaggaagaaatga
DBGET
integrated database retrieval system
