Salvelinus namaycush (lake trout): 120029199
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Entry
120029199 CDS
T07522
Name
(RefSeq) FRAS1-related extracellular matrix protein 2-like
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120029199
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
snh04091
]
120029199
Lectins [BR:
snh04091
]
C-Type lectins
Lecticans
120029199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Big_9
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
120029199
NCBI-ProteinID:
XP_038830420
UniProt:
A0A8U0TWE8
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All DBs
Position
Sna34:complement(14849883..14925426)
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AA seq
2049 aa
AA seq
DB search
MAWIISPLWQRQRTGAVFLLSALIAVIVTGDSAAQVFDSYGLSYALRSELSEDAILVANN
GIRVPFGRAVFIDPINDLVIQVQPGDRCSMTVVDNDPLSQRPGQLSPKKFPCEFGPNDVK
YSHFGSRSPPRDRVRLQLRYDTHTDTIIIPFMMEVEVIFTQLEVLTRNMPLTVDKLLGTS
NPIDRKILEFTYDRSEHQCKITSLSSGSALPRYGKLVDEGKLGEMVDCDEFIKMNIRYQH
TSAHKSPNRDYFPMIVELQDKEGNFLKQEFFQMMVRIKDGEENTAPKPSFVAMMMMEVDQ
FVMTAITPDMLAAEDIESNPDNLIFNITTPLSFEEGYIVSTDDRNLPITSFYQGDLKELK
IAYKPPSVDSETERIFQIEFEVVDTDGAVSDPFAFMIVVKPMNTLAPVVTRNTGQLLYEG
QSRPLSSSHNLGVSDEDDLDDVRIMVVDGLRHGQLTVLGSLRKFFTPADLVGGMVIYQHD
GSDTYSDNIIFRMTDGKHEVEFLFPLTIVPTDDEPPIINANTGLILFKNQIMLISPLTLS
AADIDSEDSTIRFTIEGPFSPIGEVLLRQSEAPADPSTWRFNAEDELYEKEVTEWLQQDI
TDGKLFYRHTGPHSTDTVMDQFVFRVQDDNDPPNQSEQSSFIIKILPVDDIPPELYPGTT
LQMTVHEYQLTYFRKKFLRYTDLDSEDRDLKYTVTQPPTDTDENSPVVLGSIVLTESSNT
VVTEFTQAQVNHHKISYKPPDLELGITAHVLQFQYTVEDTSGNTVTGTFSIFLQPVDNKP
PQITNTGFTIFERGTHIITRAELDTVDLDTDSSQISFTVTQPPQHGTVQYTFTDLTKGDQ
FNLLDIANDRISYIQNGDESTSDFFQLDVSDGVHVVTITIRVTVKPIDDETPTITLPAGT
IGSYIDVLENGATEITTNVIQGRDEDTDDLRLTFILEDPPVFGEILVNGVQSGSFTQADI
INGLVVYTHTSGEIGLTTKYDYFNLTLTDMSDEWTVGGNRVTGVRVQITILPMDSQAPEV
FVGPQFTVVEGEKNVIEILHISADDIDTPNDDLLCTIIIQPTSGYVENISPAPGSEKSRS
GTAISAFTIKDIRQNHIYYVQSIHKGVEPVEDRLMFRCSDGINFSERHFFPIVIIPFNDE
KPEIYMREFVVMEGMNIVIDTPILNGADADIPSDELTFIITKPPKHGFILNQLTTGTVTV
TNFTLDQIREASSIVYEHDDSETKEDSFDLILTDGKYTVEKTIIVMIIPVDDETPRMAIN
DGLEIEIGDVKVIDNNVLKATDLDSEDSTLTYVVRYGPGQGLLQRRTPYGTLENITVGMN
FTQYQVDQALIVFIHNGQEGIRDLIKFDVTDGINPLIDRYFYVTVGGIDMVFPDVVSKGV
SLKEGGRVTLTTDLLSTSDLNSPDEHLVFTITRAPQRGHLECTDGPGMPISSFTQLQLAG
SKVYYIHTADDEVKMDSFEFEVTDGYNPVFRTFRVSITDVDNKKPVLTVHSLVVNEGENK
LITPFELTAEDRDTADRLLKFTVTQVPVHGRLLFNNTRPVSSFTKQDLNENLISYKHDGT
ESSKDSFSFTVTDGTHTDFYVFPDTVFETRRPQMMKITVLSVDNGVPQIVVNKGGPTLRV
LETGHLGFLITSKTLKAEDRDSLQLSVTFKITVGPEHGFLINLGTGNATVTTFTQAEIDD
MKICYVLRDGDNATSDIFYFSIEDNGGNRLKNQVFRLNWAWVSLEKEYYVVDEEAKYLEV
VLKRRGYLGETSFVSIGTRDGTAEKDKDFRGKAQKQVQFNPGQSTATWRVRILQDEVYEQ
SETFQIVLSESVMAALEFPDTATVEILDPADESTVFIPSAVYPIEEDIGELLIPVRRSGD
ITQELMVICYTQQATATGTIPTTVLSYSDYISRPEEHNSVLRFDKGETEKSCRVVIIDDS
LYEEEESFNVTLSMPMGGRLGQEYHTARVTIIPDLDDAPGFYFGDTDYRVDESDGYVEVK
VYRTGTDLSKTATVTVRSRKTDPVSAEGRDNTVIRSFILVLSIRSSFLVTGPGMAEELQH
LPRSNLPTG
NT seq
6150 nt
NT seq
+upstream
nt +downstream
nt
atggcttggattatttcccccctgtggcaacgccaaaggactggcgctgtttttttgctc
tctgctttgatcgcggtgattgtgacaggtgactccgccgcgcaggttttcgacagttat
ggattatcatacgcattgagatcggaactatcagaggatgctatattggtggccaacaat
ggaatacgcgtgcctttcgggagagcagtattcattgatcctatcaatgatctggtaata
caagtacagccgggagacagatgtagtatgacggttgtggataacgacccgctctcccag
aggcccgggcagctctctcctaaaaagtttccctgtgagtttggacccaatgacgtaaag
tattctcacttcgggtccaggagccccccgcgggatagggtgaggctacagctcagatat
gacactcataccgacaccataatcatcccgtttatgatggaagtggaggtgattttcaca
cagttggaagtgttaaccagaaacatgcctctgactgttgacaaactgcttggcactagt
aaccccattgacaggaagattctagagttcacctatgatagaagtgaacatcagtgtaaa
ataacatccctctccagtggcagtgcattacccaggtatggaaaacttgtggatgaggga
aaacttggagaaatggtggattgtgatgaatttattaaaatgaatatccgctatcagcac
acttctgcacacaaatcacccaatagagattatttcccaatgattgtggaattacaagat
aaagagggtaattttctgaagcaggagtttttccagatgatggtgcgtataaaggatggc
gaggagaacacggctcctaaacccagcttcgtggccatgatgatgatggaggtggatcag
tttgtgatgacagccatcacccccgacatgctggctgccgaggacattgagtctaaccct
gacaaccttatcttcaacatcaccacccccctctccttcgaggaggggtacatagtcagc
acagatgaccggaacctgcccatcacctctttctaccagggagacctcaaagaactaaag
atagcctacaagcctccgtctgtggactctgaaacagaacgtatcttccagatagagttt
gaggtggtggacactgatggggctgtgtctgacccgttcgccttcatgattgtagtgaag
cctatgaacacgcttgctccagtagtcaccaggaatactggtcagcttctctacgagggt
cagtccagaccactgtccagttctcataacctaggggtcagtgacgaggacgacctggat
gatgtcaggatcatggtggtcgatgggctgcgacatggccagctgacggtgctcgggtca
ctcaggaagttcttcaccccggccgatctggtcgggggcatggtcatataccagcacgac
ggcagcgacacgtacagcgacaacatcatcttccggatgacggacgggaagcatgaggtg
gaattcctgtttcccctaacgatcgttcccacggacgacgagccgcccattatcaacgct
aacacggggttaatcctcttcaagaaccagattatgctcatttcgccactcacactgagc
gctgcagacattgactctgaggactccactatcaggttcaccatagaaggcccgttctcg
cctataggggaggtgctgctgaggcagtcagaggccccagcggacccatccacctggagg
tttaatgctgaggatgagctgtatgagaaagaggttacagagtggttgcagcaggatatc
acagacgggaaactgttctacagacacaccgggcctcacagcactgacacagttatggac
cagtttgttttccgggtccaggatgataacgacccccctaaccaatcagaacagagctcg
ttcatcatcaagattctgccagtggatgacatcccccctgagctgtatcctggtaccacc
ctccagatgaccgtacacgagtaccagctcacctacttccgtaagaagtttctccgctac
actgatctggactcggaggacagagatctgaagtacaccgtcacccagcccccgacagac
acagacgagaacagccctgtggtactggggtctattgtgttaacagaaagttcaaacact
gtagtgactgagtttactcaggctcaggtcaaccaccataagatatcatacaaaccacct
gacctggagctggggatcacagcccacgttctgcagttccagtacacggtggaggatacg
tcagggaatactgtcaccggaacattctctatattcctgcagcctgtcgacaacaagccg
cctcagataaccaacactggcttcacgatattcgagcggggaacgcacataatcaccaga
gctgagctggatactgtggacttagacacagacagtagccagatttccttcacagtcact
cagccccctcagcatggcacagtccagtacaccttcaccgacctgaccaaaggggaccag
ttcaacctgttggacattgctaatgacaggatctcctacatccagaacggagacgagtcc
accagcgatttctttcagctggatgtcagtgacggcgtccatgttgtgaccatcaccatc
agggttaccgtgaagcccatcgatgacgagaccccgaccatcaccctcccggccggaacc
attggctcctacatcgacgtcctggagaacggagctacggagatcacgactaacgtcatc
caggggagggacgaggacacggacgacctccgtttgaccttcatcctggaggacccaccg
gttttcggagagatcctggtgaacggggttcaatcagggagcttcacccaggctgacatc
atcaacggactggtggtgtacacccataccagcggagagatcggcctcaccactaaatac
gactactttaacctgacgctgacagacatgtctgatgagtggacggtagggggcaacagg
gtcacgggggtcagggttcagatcaccatcctccccatggacagccaggctccagaggtg
ttcgtaggcccacagttcactgttgtagagggagagaagaatgtgattgagattcttcac
attagtgctgatgatattgacactcctaatgatgacctgctttgtaccatcatcatacag
cccacgtcaggctacgtggagaacatctccccggccccaggctcagagaagtccaggtct
gggactgcgatcagtgcattcaccattaaggacatcagacagaaccacatctactacgtc
caaagcatccataagggagtggagccggtcgaggacaggctcatgttcagatgctcagac
ggcatcaacttctccgagagacatttcttccccatcgttatcatcccgttcaacgatgag
aagcctgagatttatatgagggagtttgttgttatggaagggatgaatattgttatcgat
acgcccatcctgaacggagccgacgcggacatcccctcggatgaactcacgttcatcatc
accaaaccacccaagcacggcttcatcctcaaccagctgaccaccggcaccgtcacagtc
accaacttcaccctggaccagatcagggaagcctccagtatagtgtatgaacacgatgac
tcggagaccaaggaggacagctttgacttaatcctgacggacggtaaatataccgtggag
aagaccatcattgttatgatcattcctgtagatgacgagacacccaggatggccatcaac
gacggtctggagatagagataggagacgttaaagtgatcgataacaatgttttaaaagcc
accgacttggattctgaggatagtactttgacgtacgttgttcgctatgggccaggccag
gggttgttacagaggagaaccccttacgggacattagagaacatcacagtggggatgaac
ttcacgcagtaccaggtggaccaggctctcatcgtctttatccacaacgggcaggaagga
atccgggacctgatcaagtttgacgtgacggacggcatcaaccctctgatcgacaggtac
ttctatgtgacagtgggcggcatcgacatggtgttccctgacgtggtcagtaagggggtc
tctctgaaagaaggcggtagagtaacgttgaccacagacctgctcagcaccagtgacctc
aacagtccagacgaacacctggtgttcaccatcaccagggccccacagagaggccatctg
gagtgtaccgacggccctggcatgcccatctcctcctttacccagctccagctagctggg
agcaaggtgtactacatccacacggccgatgatgaggtcaagatggacagctttgagttc
gaggtcaccgacggttacaaccctgtgttccgcacgttccgtgtctccatcaccgatgtg
gacaacaagaaaccggttctaacggttcacagcttggtggttaacgagggagagaacaaa
ctcatcacacccttcgagctgaccgcagaggaccgcgacacggctgaccgcctcctgaag
ttcacggtcacccaggtccctgtccacggtcgcctcctcttcaacaacacccgccccgtc
tcctccttcaccaaacaagacctgaacgagaacctcatcagctacaaacacgacggtact
gagtcctccaaggattccttctcctttaccgtgactgacgggacgcacaccgacttctac
gtgttcccagacaccgtgttcgagacgcggcgcccccagatgatgaagatcacggtcctg
tcggtggataacggggtgccccagatcgtggtgaataaaggggggcccaccctgagggtg
ttagagacgggtcacctggggttcctcatcacctctaagactcttaaggccgaggacagg
gatagtcttcagctatctgtcacctttaagatcaccgtgggaccagaacatggattcctc
atcaacctgggtacaggcaacgctaccgtcaccacattcactcaagctgaaattgatgac
atgaagatttgctacgtactaagagatggtgacaatgctacgagtgacatcttctatttc
tccattgaggacaatggaggcaacaggctgaagaaccaggtgttcaggctgaactgggcc
tgggtttccctggagaaggagtactatgtggtggacgaggaggccaagtacctggaggtg
gtcctcaaacgacgaggatacctgggagagacatccttcgtcagcatcggcaccagagat
ggtacggcggagaaggataaggacttccgtggtaaagcccagaagcaggtccagtttaac
ccaggtcagagcacggctacatggagggtgaggatcctgcaggatgaagtgtacgagcag
tctgagaccttccagattgttctatcagaatctgtcatggctgccctggagttccctgac
acagccactgtggagatcctcgacccagctgatgagtcgacagtgttcatcccgtctgca
gtctaccctatagaggaggacattggggagctgctgatcccagtacgcaggagtggtgac
atcacacaggaactcatggtcatctgctacacacagcaagccacagctacagggaccatc
cccactacagtcctgtcctactctgattacatatccagacctgaggaacacaacagtgtc
ctgcgctttgataagggcgagacggagaagtcctgtcgtgtggtgatcatagatgactct
ctgtatgaagaggaggagagcttcaatgttaccctcagtatgcccatgggaggccgtctg
ggacaggagtaccacactgccagggtcaccatcatacctgacctggatgatgctccagga
ttctacttcggcgacacagactaccgtgtggatgagagtgatggttatgtggaggtcaag
gtgtataggacaggcactgacctctctaaaacagccacggtcactgtacgctccaggaaa
acagaccctgtctctgctgaaggtagagacaatacagtcattagatcatttattttggta
ctgtccatacgtagctcgtttttggtcacaggtccaggaatggctgaagaattgcaacat
ttacctagatctaatttacctactgggtga
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integrated database retrieval system
