Salvelinus namaycush (lake trout): 120029527
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Entry
120029527 CDS
T07522
Name
(RefSeq) nucleolar RNA helicase 2-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120029527
03036 Chromosome and associated proteins [BR:
snh03036
]
120029527
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120029527
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
Helicases
120029527
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
120029527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
Cas3-like_C_2
Gly_acyl_tr_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
120029527
NCBI-ProteinID:
XP_038830717
UniProt:
A0A8U0PTC3
LinkDB
All DBs
Position
35:complement(8069467..8077037)
Genome browser
AA seq
771 aa
AA seq
DB search
MPSKILFENEDIGMEGEMDISAGSTTPKKIKEKKTKEGKKIKKQKTVVEEEPDCEPPAPK
KKKKKKKEKEDATNGGAEVDVNGNAQDDVNGNAQESPLKDNTFHSNEESADNDKATEKKK
KKKKKEKKTEEKVIVNGVFPETPKLIAQTNGHTAATTPAQSSEDSESGVETETPEQKEGA
FSNFRISPNTIKLLEARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEK
LQNDPDDKKRGRAPKILCLAPTRELAIQVSKDFKDMTKKLSVTCFYGGSSYNPQLDAIRS
GIDILVGTPGRIKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDSET
NPQTLLFSATCPSWVYDVAKRYMRPTYEHVDLIGKKTQKTATTVEHLAIACHWSQRAAVI
GDVVQVYSGSHGRTIVFCETKKDANELSMNASIKQSSQSLHGDIPQKQREITLKGFRSGT
FEVLVATNVAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEED
QLRYVEEKACITFKRVGVPTANDIIKSSSKDAVRFLDSVPPQAIEYFRVSATKLIEERGA
VEALSAALAHISGATALEQRSLLNSDTGYTTMTMNSSQELQNIGCAWRGLKEQLGEEIDN
MIRGMTFLKGKMGVCFDVPADKVKEYQDAWQDGRRWQLSIATELPELEEKPRMGGDRGYG
RSFGGQGGDRGYGRSFGGQGGGRGFRNGGGGGGNWRGGGSHKRSFSSAFDY
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaaagattctttttgaaaacgaagacatcggaatggaaggtgaaatggacatt
agtgcgggcagtacgacacccaaaaaaataaaggagaagaagaccaaggagggaaagaaa
atcaagaaacagaaaacggttgttgaagaggaacctgactgtgaacctcctgctcccaag
aagaagaagaagaagaagaaggaaaaggaggacgcaactaacgggggcgcagaagttgat
gttaacggcaacgcacaagatgatgttaacggcaacgcacaagaatcacctttgaaggac
aacacatttcattccaatgaggagtctgcagacaatgacaaagcaaccgagaagaagaaa
aagaagaagaaaaaggaaaaaaagacagaagaaaaagtcatcgtcaacggagtgtttcct
gagactcccaagctgattgcacaaactaatgggcataccgcggcgacaactccagcacaa
tcaagcgaggactccgaaagtggagtagaaaccgagacaccagaacagaaagagggagcc
ttctctaacttcagaatctcccccaacaccattaaactacttgaagcaagaggaatatct
tacctctttgacatccaaacacaaaccttcaattctgtgtacgagggaaaggatgtgatt
ggccaggcaagaacaggcactgggaaaactttagcttttgccattccgctgatcgagaaa
ctccaaaatgacccagatgacaagaagaggggcagagccccaaagattttgtgccttgct
ccaaccagagaattggctattcaagtatccaaggatttcaaggacatgacaaagaaactg
tctgttacatgtttctatggtgggagctcctacaacccccaacttgatgcgatccgcagt
ggcatcgatatcctagtgggaactccaggtcgtatcaaggaccatctacagaataacaaa
ctggacctgtctcaattgaagcacgttgtattagatgaagtggaccaaatgcttgatatg
ggctttgcagaacaggtggaggagatactgtctgcgtcttaccaaaaagactctgagacc
aacccccagaccctgctcttctctgccacatgcccatcatgggtgtatgatgtggcaaag
aggtacatgaggccaacctatgagcatgtggacctcattggcaaaaagacccagaaaact
gccaccacagtagagcaccttgctatagcgtgtcactggtcccagagggctgcagtcatt
ggggatgtggtgcaggtttacagcgggagccacggccgcaccatcgttttctgtgagacc
aagaaagatgccaacgagctgtcaatgaacgcctccataaagcagagttcccagtcactt
catggggacattcctcagaagcagagggagatcacactgaagggcttcagaagtggcacc
ttcgaggtcttagtggccaccaacgttgctgcccgcgggttggacatcccagaggtagac
ctggtcgtgcagtgctcacccccaaaggatgtggagtcctacattcaccggtcaggtcga
actggtcgggctggcaggactggcgtctgcatctgtttctaccaacgcaaagaagaagac
cagctccgatatgtagaggagaaagcatgcattacatttaagcgggttggagtgcccact
gccaatgacatcatcaaatcgtccagtaaagacgcagtgaggtttttagactctgtgcct
ccccaagccattgagtatttccgcgtgtctgctaccaaactgattgaggagcgtggggcc
gtggaggccctgtctgccgccctggcacacatatcaggagccactgccttggagcagagg
tccctcctcaactctgacactggctacaccacaatgacaatgaacagctcccaggagctg
caaaacattggctgtgcctggcgtggtctgaaggagcagctgggagaggagattgacaac
atgatccgggggatgaccttcctcaagggcaaaatgggagtctgttttgatgttccggct
gacaaggtaaaggagtaccaggatgcctggcaggacggtagacgttggcagctgtcaatc
gccacagagcttcctgagctggaggagaaaccgcgcatgggtggtgaccgtggatatgga
cgttccttcggaggacagggaggtgaccgtggatatggacgttccttcggaggacaggga
ggtggccgtggcttcagaaacggaggaggcggaggcggcaactggagaggtggaggcagt
cataaacgcagcttcagcagtgcgtttgattattaa
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