Salvelinus namaycush (lake trout): 120029538
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Entry
120029538 CDS
T07522
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120029538 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snh03400
]
120029538 (msh2)
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120029538 (msh2)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
120029538
NCBI-ProteinID:
XP_038830733
UniProt:
A0A8U0TWA0
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Position
Sna35:26725463..26743702
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AA seq
928 aa
AA seq
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MAVQPKQSLSMDAATEHGFLTYYFSMPEKPDTTFRVFDRGDYYTVHGTDALFAAKEVFKT
NGVIKTLGSGSRKLESVVLSKTNFEALVRDLLLVKQYRVEVYRNQSKTKDHSWQLEYKAS
PGNLSQFEEVLFGGAEGRGAGSAGVVAVRLAVGGDGQRVVGVGYVDASLRTMGVCEFLDG
ETFCNLEALLVQLSPKECLLPQGDNTDNIRQVVQRGGVLLSDRKRTEFSSKDMTQDLNRL
LRTRKGEANACNVLPELDKQVAMSCLAAVVRYLELLSDQSNFSSFSLTTLDLSQYMRLDN
AAVQALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERLDLVE
CLVNDGEARQTLQDDLLRRFPDLHRLSKKFHRLSATLQDCYRGYQAVGQIPALLLALEKH
QGSHQMLLEAVFISPLRDLQADFIKYQEMIETTLDMNQVEHHEFLVKASFDPVLSELREK
MDTLENSMQSVLNSAARELGLDAGKTVKLECNNVLGYYLRVTCKEEKSLRNNKKFTTLDV
QKNGVRFTNSKLSSLNEDYTRNREEYEEAQNAIVKEIISIAAGYVDPLQSLSDVIAQLDA
VVSFSVASVSAPIPYVRPRLLAVDRRRLELQQARHPCLESDADTAFIPNDISFIQGEQSF
YIITGPNMGGKSTFIRQVGVISLMAQIGCFVPCEKAELSMIDSCLCRVGAGDSQLKGVST
FMSEMLETAAILRSATKNSLIIIDELGRGTSTFDGFGLAWAISEHIASKIGCFCLFATHF
HELTALATHHPTVRNLHVTALTTQHTLTMLYRVKPGVCDQSFGIHVAELACFPPAVVAMA
KQKAAELEEFQEEPSGEEGPEAKKRRSDKQEGEGLIQSFLEKVKSLPAVTMTDQEVKAEL
KAMKQELVAHNNAYITELLARSAPIHST
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaaacagagcttgtccatggacgctgctaccgaacatggcttcctt
acctactacttttccatgccggagaagccagacaccaccttcagggtcttcgaccggggt
gactactacacggtgcacgggaccgacgcgctgttcgccgccaaggaggttttcaagacc
aacggagtcatcaagaccctgggctcaggtagccgcaagctggagagtgtggttctcagc
aagacaaactttgaggctctggtcagagacctgctgctggtgaaacaatacagagtggaa
gtctacaggaaccaaagcaaaaccaaggatcacagctggcaactggagtacaaggcgtct
ccagggaatctgagccagtttgaggaggttctatttggcggggctgagggaagaggggct
ggctcagcgggggttgtggccgtacggttggctgtcgggggtgacggacagcgcgtggtg
ggcgtgggctatgtggacgcgtccctaaggaccatgggagtgtgtgagttccttgatgga
gagactttctgtaacctggaggctctacttgtgcagctgagccccaaggaatgtctgcta
ccacagggtgacaacactgataacatacgacaggtggtgcagcgtggcggtgtgttgctg
tcagacagaaagagaacagagttcagtagtaaagacatgacccaggacctcaaccgactg
ctacggaccaggaaaggggaggccaacgcctgcaacgttctgcctgaactagacaaacag
gtagctatgtcatgcctggcagcagtggttcgttacctggagttgctgtctgaccaatca
aacttcagctccttcagcttgacgacccttgacctgagccagtacatgaggctggacaac
gctgctgtacaagccctcaacctctttcagggttctcccgatgacaccagtggagcccac
tcattggccgggctactgaataagtgccgcacccctcagggccagcgattggtcaaccag
tggatcaaacagccactcatggacaagaacaggattgaggagagactggacctggtagag
tgtctcgtgaatgacggtgaggccagacagactcttcaggacgatctgttgcggcggttc
ccagatctccaccgcttgtccaaaaagtttcaccggctctcggcaacactgcaggactgt
taccgcggttaccaggccgtgggccagatccctgcacttctgttggctctggagaaacac
caaggaagtcaccagatgctgttggaggcagtgttcatctctcctctcagagacctgcag
gctgacttcatcaagtaccaggagatgatcgaaactacactggatatgaaccaggtggag
caccatgagttcctggtgaaggcgtcgtttgacccggtgctctctgagctgagggagaag
atggacacactggagaacagcatgcagagcgtactgaacagcgcagcacgggaactaggt
ctggatgctggtaagacagtgaagttggagtgtaacaatgtgttggggtattacctgagg
gtgacctgtaaagaggagaagagtctgaggaacaacaaaaagttcacaacgctggacgtc
cagaagaatggagtccggttcaccaacagtaagctgagttctttgaatgaagactacacc
aggaacagagaggagtatgaggaggctcagaacgccatcgttaaggagatcatcagcatc
gccgcgggctacgtggatcccctgcagtcgttgagtgacgtcatcgcccagctggatgcg
gtggtcagcttctctgtggcgtcagtctctgcccccatcccctacgtcaggccacgcctc
ctggctgtggaccgcaggcgcctggagctccaacaggccagacacccctgcctggagtcg
gacgcagacacagccttcatacctaatgatatatccttcatccagggggagcagagcttc
tatatcatcacaggtcctaatatgggcgggaagtctaccttcatcaggcaggtgggcgtg
atctctctgatggctcagattggctgctttgtcccctgtgagaaggcggagctaagcatg
attgacagctgtctgtgccgtgtgggggcgggggatagccagctcaagggcgtgtctaca
tttatgtcagagatgctggagaccgcagctattctccgctctgccacgaagaactctcta
ataataatcgatgagttgggtcgaggaacatctacattcgatggctttggtctggcctgg
gccatcagtgaacacatcgcctctaagattggctgcttctgtctgtttgccactcacttc
cacgagcttacggcgttggccacacaccaccccaccgtccgcaacctgcacgtcaccgct
ctgaccacgcagcacacactcaccatgctctacagggtcaaaccaggtgtgtgtgaccag
agttttgggatccatgtggcggagttggcgtgtttcccgccggcggtggtcgccatggca
aagcagaaggctgcagaactggaggagtttcaggaggagcctagtggggaggaggggcca
gaggccaagaaacgacgcagcgataaacaggagggagagggtttgatccagtcgtttctg
gagaaggtgaaatctctgccggcagtcaccatgactgaccaggaggtgaaggcggagctt
aaagccatgaagcaggagcttgttgcccataacaacgcttacatcactgagctcctggca
cgttccgcccctatccactcaacctga
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