Salvelinus namaycush (lake trout): 120030235
Help
Entry
120030235 CDS
T07522
Name
(RefSeq) LOW QUALITY PROTEIN: multiple PDZ domain protein-like
KO
K06095
multiple PDZ domain protein
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
120030235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
L27_2
MPDZ_u10
DUF5585
L27_1
Motif
Other DBs
NCBI-GeneID:
120030235
NCBI-ProteinID:
XP_038831510
UniProt:
A0A8U0PUM9
LinkDB
All DBs
Position
Sna36:complement(12650392..12711208)
Genome browser
AA seq
2229 aa
AA seq
DB search
MDTQRALQAVERLQAKLKDRGEVPTEEKLSLLKSVLQSPLFHQILALQKSVQLLKDQGGV
TSTLSGDLSECYTSAQANGGHLAYPEASTSTQVNGKQSPEDFEHIIRSMAQGRYVTHMEL
VKPLSGGLGFSVIGLRSENRGELGIFVQEIQPGSVAHCDGKLKESDQILAINGQPLDQTV
THQQAIGILQRASECVQLTIARGPIPQLASPVVSRTPSAASTLSAHSSAAYWNHVETMEL
VNDGTGLGFGIVGGKTTGVIVKTILPGGIADQDGHLRSGDHILKIGDTDLYGMGSEQVAQ
VLRQCGNRVKLVITRGPPEETAIVPMVLPTVTEQQGYEEEEAEAFDVGLTKNAQGLGITI
AGYVGDKNSEPSGIFVKSITKDSAVEQDGRIHVGDQIIAVDGNNIQGYTNQQAVEVLRHT
SQTVHLKLIRRGFRPEDIPPAAVVPSVIVVSPTPGGRDTTLERTDVVDATTQDKKQYQAL
SGESDVTNVKDQLTENTRDDAKLTEDEELELKKKWQETLGPSNEVVVAQVEKFSESSGLG
ISLDANSGHHYILSVLPEGPVGRCGKLFSGDELLEVNGISLIGETHKEVVSILKELPVCV
YMACCRPAPLLKSDRDSGQPGLDEFATEPKMKIQGDLGSFLVFEGSEGVATRENVTDETL
GAPLAMWETEIQDIELEKGESGLGFSILDYQDPMDPAKTVIVIRSLVSEGVAEQDGRLLP
GDRLMFVNSTNLDNASLEDAVQALKGANIGKVHIGVAKPLPIDSNEVDLTDERVLAHRFS
GEEDDTFQASMLALHGSTCSADLSYQMILQSSTPKRSARLDLLTEHPFVTLSCLADDTEP
FSPEENPIAFPLPRSIGSHTLMIDNTLASSDQYLAHQLTHLEPSDLSNSYSPYTDPEPGL
NDLGEPMQSLRFPVESAMALADIGEMEGLMKGDEPSVKQSKEEGDKIITTGSNFERTITV
VKGNSSLGMTVSAVKDGLGMHIRSIIHGGSISRDGRLGVGDLILAINGEPTANLTNTQAR
AMLRRHSLIGPDMGSACAPEDDLCPFYVWHMNAGSLVCVCAHVCVCVISITYVPVEYLEE
YKASLEQPKDDIFSDAPQAPKREIPELPEREDGEGEESELQSATFSNWNQPRRVELKKEA
GKSLGISIVGGRGMGSRLSNGEVMRGIFIKHILEDSPASRNGTLKTGDRVVEVDGVDLRD
ASHEQAVEAIRRAGNPVVFLVQSIIHRPRVSLLAPCVGTLAPCVGTLAPCVGTLAPCVGT
LAPCVGTLAPCVGTLAPCVGTLTPCVGTLAPCVGTLAPCVGTLAPCVGTLTPCVGTLAKW
LMSFNNNTLFPSLKPLIIPFNTTLTSKSYLTILYPTNTTVAIYISLFNSLMDSLSGFISL
KVQRKSSTTDTNEERAAAMARRNSDKPLKREAGKTSSTTPHLSLPVVPHVGETDTDTLTE
IPDRQAQAEDEDEFGYSWKSIIQRYGSLPGLLHMIELEKGKTGLGLSLAGNRDRSRLSVF
VVWIDPCGAASKDGRIVVGDELLEINGQILYGRSHQNASSIIKSAPSKVKIIFIRNTDAL
NQMAVGPVREHGDTLEPQTELETCTSIVPSAIDVDVFKYVQHVILPKEEGGFGITFSEED
PNNGVVIQSISEKGPAGKDGSIKSGDKLLAVEDEPVVGYTVERVHSLLGNAKGSVKLTIC
TNESLTLPPYYTDQATSLPSIYMANLGQPESEPIRSSSRSSTPGTLASSDPVTCPIIPGC
ETTIDISKGHTGLGLSIVGGCDTLLGTIIIHEVYEEGAASKDGRLWAGDQILEVNGIDLR
VATHDEAINVLRQTPQRVRLSVFRDEAQYKEEDLWDAFTVELNKKPGQGLGLSIVGRRND
TGVFVSDIVKGGVVESDGRLMQGDQILSVNKEDVRNATQESVAALLKCGVGPIVMEVGRF
KAGPFHSERRFSQSSQMSETGSCKVTPHSLSASSGSLQMDCDSVQHTSQESKTFLVDKHL
AVWKAKASPHVVVICVDSFWLFTLVFSCLLFYIALDHQQIRSVEFTKGLTDSLGISIAGG
VGSPLGDVPIFIAMMNPTGLAAQTHKLKIGDMIVSICGTATEGMSHSQAVTLLKNATGTI
ELQVVAGGDTTVTGPSQEQTAAGLSLSSLTATSIFHDDLGPPQYKTITLARGPDGLGFSI
VGGFGSPHGDLPIYVKTVFGKGAASEDGRLKRGDQIMAVNGQSLEGVTHEEAVGILKRTK
GTIALTVLS
NT seq
6690 nt
NT seq
+upstream
nt +downstream
nt
atggatacccagcgtgccttgcaggcagtggagcgtctccaggccaagctgaaggaccgg
ggggaggtccccaccgaggagaagctcagcctgctcaagtctgttctccagagccccctg
ttccaccagatccttgccctgcagaagtctgtccagctcctcaaagaccagggtggtgtc
acatcaacacttagcggtgacctgagtgaatgctacacatcagcccaggccaatggtggc
catcttgcctacccagaagcctccactagtacacaggtcaatgggaagcaatcgcctgag
gattttgagcacatcattcgctccatggctcaggggcgctacgtgacgcacatggagctg
gtgaagccactgtctgggggtctgggcttcagcgtgattggcctgaggagcgaaaatcgc
ggggagctgggcatcttcgtccaggagatccagcccgggagcgtggcccactgcgatggg
aagctgaaggagtcagaccagatcttggccatcaacggtcaacccctggaccagacagtg
acccaccagcaggccataggcatcctgcagagagcgtctgagtgcgtgcagctcaccata
gccagaggacccatccctcagctggccagccccgtggtgtcccgtaccccctccgctgcc
agcaccctgtctgcccactccagtgcggcctactggaatcatgtggagaccatggagctg
gtcaacgacgggacaggcctgggctttggcattgtgggaggaaagaccaccggtgtcatt
gtcaaaaccatcctgcctggaggcatcgctgatcaggatgggcatctgcgcagtggggac
cacatcctcaagattggggacactgacctatatggcatgggaagtgagcaggtggctcag
gtcctgaggcagtgtggtaaccgagtgaagttggtcatcaccagaggccctccagaggag
accgccatcgtcccaatggtgttgcccacggtcacagagcaacagggatacgaggaagag
gaggccgaagcgttcgacgttgggctgactaagaacgcccagggtctgggaatcaccatc
gccggctatgtgggggacaaaaattctgagccctctggtattttcgtgaaaagtataact
aaagacagtgcggtagagcaagacggccggatccatgttggggaccagatcatagccgtg
gacggtaataacatccagggctacaccaaccagcaggccgtggaggtgttgagacacaca
agccagacagttcacctgaagctgatcaggcgaggcttccgtccagaggatatcccaccc
gccgctgtggtgcccagtgtgatcgtagtctcaccaaccccaggtggcagagacacgaca
ctggagaggacggatgttgtggacgccaccactcaagataagaaacagtaccaggcattg
agtggggaatctgatgtcaccaacgtgaaggatcagttaactgagaacaccagagacgat
gcaaagctaacagaggatgaggagttggagctgaagaagaagtggcaggagactctcggc
cccagcaacgaagtagtggttgcccaggtggagaagttcagtgagagcagtggtctggga
atcagtctggatgccaacagcgggcaccactacatcctctccgttctgccggaggggcca
gtgggacgctgtgggaaactcttcagtggggacgaactgctcgaagtcaatggaatatcc
ctgattggtgagacccacaaggaagtggtgagcattctgaaggagctgcctgtctgtgtc
tacatggcctgctgtaggcccgcccctctcctgaagagtgacagggattctggccaacca
gggttggatgaatttgctactgaacctaaaatgaagatacagggagacctcggcagtttc
ctggttttcgaaggttctgagggggtggcgacgagggaaaatgtaacggatgagacactc
ggagctcctttggccatgtgggagacggagatacaggacattgagctggagaagggtgag
agcggactgggattcagcatcttggactaccaggacccaatggatcctgccaagacggtg
attgtgattcgctctctggtgtctgaaggagtggcagaacaggatggcaggctattgcca
ggtgaccggctcatgttcgtcaacagcaccaacctggacaacgccagtctggaggacgct
gtccaggcattgaagggggctaacatcggcaaggtccacattggggtggccaaaccacta
cctattgactccaatgaggtagacctgaccgacgagagggtgttggcgcatcgcttctct
ggcgaggaggatgacaccttccaggcatccatgcttgccctccatggcagcacctgcagc
gctgacctgtcctaccagatgatcttgcagtcctccacacccaagcggagtgctcgtctg
gacttgttgaccgaacatcccttcgtgacgttgtcctgcctcgcagacgacactgaaccc
ttttccccggaggagaatcctatcgctttccccctgcccaggagtattggaagtcacacc
ctaatgattgacaacacactagctagctccgatcagtacctggcacatcaattaacccat
ttggagccgtcggatctgtcgaactcgtacagtccgtacactgaccccgagcccggtttg
aatgatttgggggagccaatgcagtctctgcgttttccggtggagtccgccatggccctt
gcggacataggggagatggaaggcttaatgaagggggatgagccatctgtaaagcagtcc
aaagaggaaggggacaagattataaccactgggagtaattttgaaaggacaatcactgtt
gtcaagggcaactccagtctcggaatgaccgtgagcgccgtcaaggatggcttggggatg
cacatccgcagcatcatccacggaggctccatcagccgagacggccgtctgggggtgggg
gacctcatcctggccatcaacggcgagcccacggccaacctgaccaatacacaggcccgc
gcaatgctccggagacactccctcatcgggccagacatgggatctgcttgtgcaccagag
gacgatctgtgccccttttatgtgtggcatatgaatgcaggctcattggtgtgcgtgtgt
gcgcacgtgtgtgtgtgtgttatcagcatcacctatgttcccgtggagtatctggaggag
tacaaggccagcctggagcagcctaaagatgacatcttctctgatgctcctcaggcccca
aaaagagaaatcccagaactcccagagcgggaggatggagagggagaggagagcgagcta
cagagtgccaccttcagtaactggaaccagcccaggagggtggagctcaaaaaagaagct
ggcaagtcccttggcatcagcatcgtggggggcagaggaatgggcagtcgcctcagcaac
ggcgaggtgatgcggggcatcttcatcaaacacatcctggaggacagccccgccagccgc
aatggaaccctgaagactggagacagggttgttgaggtggatggcgtggacttgagagat
gccagtcacgagcaggctgtggaggccatccgcagggcaggaaaccctgtcgtgttcctc
gtccagagtatcatccacaggcccagggtgagccttctagctccctgtgttggcacgcta
gcgccctgtgttggcacgctagcgccctgtgttggcacgctagcgccctgtgttggcacg
ctagcgccctgtgttggcacgctagcgccctgtgttggcacgctagcgccctgtgttggc
acgctaacgccctgtgttggcacgctagcgccctgtgttggcacgctagcgccctgtgtt
ggcacgctagcgccctgtgttggcacgctaacgccctgtgttggcacgctagctaagtgg
ctaatgtctttcaacaacaatactttatttcctagtctcaaaccattaattatcccattt
aacacaacattaacttcaaaaagctacttaaccatcctgtatccaacaaatactacagta
gctatctatatctcattattcaattcgttgatggactccttgtcaggattcatttcacta
aaagttcaacggaaatcctcaaccacggacaccaacgaggagagagcggcggccatggca
cggcgcaatagtgacaagccactaaagagggaagcgggaaagacatcgtccacaactcct
cacctctcccttcccgtggttccccacgtcggagagacagacaccgataccctgacagag
attcccgacagacaggcccaggcggaagacgaggatgagtttggctacagctggaagagc
atcattcagcgctacggcagcctcccggggctgctgcacatgattgagctggagaaaggg
aagaccggcctgggccttagtctggctggcaaccgcgaccgctctcgcctgagcgtgttt
gtggtctggattgacccctgtggcgctgccagcaaagatggtcgcattgtggttggggat
gaactgttggagatcaacgggcagattttgtatgggcggagtcaccagaatgcctcctcc
atcatcaaaagcgctccgtcgaaggtcaagatcattttcatcaggaacacagatgctctg
aaccagatggctgtaggaccagtgagggaacatggagacaccctggagccccagacagag
ctagaaacatgtacttccattgtaccctcggcgatcgatgtcgacgtgttcaagtatgtg
cagcacgtcattctgccgaaggaggagggtggattcggcatcactttcagtgaggaagac
cccaataacggggtggtgattcagagtatatctgaaaaaggaccagcaggaaaggacggc
agcatcaaatctggagataaactgctggctgtggaggatgaaccagtggtgggctacact
gtggagagggtccactctctactggggaacgccaaaggctcagtgaagttgacaatctgc
acgaatgagtcattgaccctccccccctactatactgatcaggccaccagcctccctagc
atctacatggctaacctgggccagcctgagtcagagccgatcaggagctcaagtcgctcg
tccacccctggcactctggcctcatctgaccctgtgacctgtcccatcatccccggctgt
gagaccaccatagacatctccaaaggccacacgggcctgggcctcagcatcgtggggggc
tgtgacactctattggggaccatcatcattcacgaggtctatgaggagggagctgcctcc
aaggatgggagactttgggctggggatcagatcctggaggtgaatggcattgacctgcgc
gtggccactcacgacgaagctatcaacgtgctacggcagacccctcagcgggtgcgtctg
agcgtgttcagggatgaggctcagtacaaggaggaggacctgtgggatgcctttaccgtg
gagctgaacaagaagcccggccagggcctgggcctcagcatcgtggggagaaggaacgac
acaggggtgtttgtgtcggacatagtgaaagggggcgtggtggagagtgacgggaggctg
atgcagggagaccagatcctgtccgtcaacaaggaggatgtcagaaacgccacccaggag
tcagtggctgcactgctgaagtgtggtgtgggacccatagtgatggaggtgggcagattt
aaagccggacccttccactctgagagaaggttctcacagagcagtcagatgagtgaaacg
ggcagctgcaaggtgacccctcactcgctgtcagcctcctctggtagcctccagatggac
tgtgacagcgtacaacatacaagtcaggagtctaagacctttttagttgataaacatcta
gctgtttggaaagctaaagctagccctcatgtcgtggtcatttgtgtcgattcattttgg
ctgtttactcttgttttctcttgtttactcttttatatagcactggaccaccagcagatc
agaagtgttgaattcacaaagggtctcactgattcattgggcatcagtattgcgggtgga
gtaggcagtcccctgggcgatgtgcccatcttcatcgccatgatgaaccctaccggcctc
gctgcccagacacacaaactcaagatcggtgacatgatcgtcagtatctgtgggaccgct
actgagggtatgagccacagccaggccgtcaccctgctgaagaatgccaccggcaccatc
gagctgcaggtggtagcagggggtgataccacagtgaccggcccatctcaggagcagaca
gctgccggactctcactctccagccttactgctactagcattttccacgacgacctggga
cctcctcaatataagaccattaccctggccaggggcccagatggcctgggcttcagcatt
gttggtggctttggaagcccacatggagacctgcccatttatgtgaaaaccgtgtttgga
aagggagcagcgtcagaggacgggcgtctgaagcggggggatcagattatggctgttaac
ggacagagtctggagggggtcacccacgaggaggccgtgggcatcctgaagaggaccaag
ggaacaattgccctcactgtgctctcctag
DBGET
integrated database retrieval system
