Salvelinus namaycush (lake trout): 120030237
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Entry
120030237 CDS
T07522
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh02010
ABC transporters
snh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120030237
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120030237
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
snh02000
]
120030237
Transporters [BR:
snh02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120030237
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DUF4162
AAA_23
MukB
Motif
Other DBs
NCBI-GeneID:
120030237
NCBI-ProteinID:
XP_038831511
UniProt:
A0A8U0TXI6
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All DBs
Position
Sna36:13155196..13373486
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AA seq
2184 aa
AA seq
DB search
MGLLTQLGLLLWKNFTLRKRQKVRLVVELLWPLFLFFILVWVRSTTQPIYQGECHYPNKA
MPSAGVLPWLQGMICNIDNPCVNHSTPGEAPGQVNNFNNSRIAGMLIELQSLLANRSIIT
KIQTLSDDVDQWVLILQTSNHEKGQPIPLRSILNDNEMFTTYLRENLSMPSTVADSLITS
NIRLNEMMGISRQDDLRITLCNGTTLDRYVEFTSAFDKEAFQKVSCSLTAQQLRQTREVF
LQNLDTRKMLTNIKKLQNSMLLKAADMLDFRADAFGSLNILLCGKLPNSSSTKTTMNFPA
FGVMRNDTENNANSSAFCKVLIDTLEGTPGLRIVWRTFRPLIQGKILYTPDTPATRLMVK
EANSTFNALAMLKELLEAWEDFEPRGWNYFQNGPQVSALRAFLDNPVFAAALNHGLKGTR
WTEELLANFLYNSPPEDRPAGMPPNDWRDVFNATSQILDLLKKFIGCLDLDKFEAVDSEG
HLLARALELLENDTYWAGIVFEDLDPAASHPPPYVKYKIRLDIDEGESTNKIKERGWSPG
ARDSFNNLRYIWGGFAYLQDMMDHGIIRVHTNKSQPLGVFAQQMPYPCYVDDVFLASIGT
MLPMYLVLAFMYTVCMTIKGLVLEKELRLKEVQRAVGVQNGAIWFAWFTENFVLLMVPCA
FISVMVKYGKVLQYSDPSVIFVFLLVFCVATIMECFFISVFFSKANLAAACGGLIYFVLY
LPHLLCYAWRDVMGFQVKIAVSLLSCVAFGYGCENFAKYEEQGIGIQWSNIAQNPEDGDR
YSFIVSIIMMLVDALIYWLLTWYMENVFPGQYGIAKPWYFPFTASYWCGTSPAPNADPSQ
FKDPIEYTGIVGNYLEKPPLNMKAGVSIRNLVKIYKTGKKLAVDGLTVDFFENHITSFLG
HNGAGKTTTMSILTGLFAPTSGTALINGYDIRTDMDTIRKHLGMCPQHNVLFNDLTVEEH
IYFYSRLKGRSRDEVKTEIDQMIKDVGLPHKRKEFAKNLSGGMQRKLSVAIAFVGGSNIV
ILDEPTAGVDPYARRGIWELLLKYKQGRTIILSTHHMDEADILGDRIAIISHGKMCCYGS
SLFLKKYFGSGYYLTLVKAGDGQMTGVEQRQVKEETGESLRRTSLVEGIARQNWSNSEPT
DVSKVVCRHVPEAVFLESIGQEITYILPYGGAKDGTFALLFEELDLKMADIGVTNYGISD
TTLEEIFLKVAEDTGVDAEIPAEDKRKVTFTSRVEDVERVANVNGKGSSVITGWELIRRQ
FLALFIKRFHHARRSRKGLIAQVILPAVFVCLSLIFSVIVPPFAEYPNLELQPWMYGLPQ
TTFYSNDGPPNNTEVARVADSLVNNPGFGTRCMANNPIPNLPCVPNDSKWFTPTVDPSIS
NIFINGNWSMANPSPNCQCSTPQKTTMLPDCPPGAGGLPPPQRTQNTTDTLQDMTGRNMT
DFLLKTYKEAGRKRYGGISVGGVNSQVRMTEPEIEAVIRDLRSLLNSSQDNTTNQMLLNT
ETLLKELGTRDNVKVWFYNQAWHGIVSFLNVANNAILRGNLPPGHDPREYGISASSHPLN
LTKAQLSYQAMAATSTDVVVSICVIFAMSFIPASFVLFLIQERVSKAKHLQFVSGVNPTV
YWVANFAWDICNYIVPCLIVIVIFLCFQQKAYVSLSNLPALILLLMMYGWSITPMMYPAS
FIFNVPSTAYVVLTCINLFIGINGSVATFVMELFADDNISKINGIVKQVLLIFPHFCLGR
GLIDMGKNQAMATLYESLGEDRYQDPLSWDMVGKNLCAMAIQGAVMFTITLLIQYKFCYK
PRLISGESFSKEDEDVDVARERARIHKGGSEKDLLRICDLSKVYSGKKIPAVDRVCVGVP
AAECFGLLGINGAGKTTTFKMLTGDISISGGEAFLNGYSIRTEMRDVHQNMGYCPQFDAL
NDLLTGREHLEFYARLRGVPEEEVPMVAEWGIQKLGLVKYSNKSAGTYSGGNKRKLSTAM
ALIGCPPVVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEALCTRMAIM
VNGQFKCLGSIQHLKSRFGDGYTVIVRVGGSPPALGPVEEFVYETFPGSVLKEKHHNTLQ
YQVPHSEGALASIFSHFTTHQQRLGVEDYSVSQTTLDQVFVNFARYQQEEDNQALQAYDN
KVDVSDEMPMETRTSTDSTVPESV
NT seq
6555 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacacaactcggtctgctcctgtggaagaacttcactcttcggaagaga
caaaaggtgcgtctggtggtggagttgttgtggcctctctttctgttcttcatcctggtc
tgggtgagatcaaccacccaacccatttaccagggcgaatgtcattatccaaataaagcc
atgccttccgccggggtgctgccttggcttcaaggcatgatatgtaacatagacaaccca
tgtgtaaaccattccacgccaggagaagcaccgggacaagtcaacaacttcaacaattcc
agaattgctgggatgttgatcgagttacagtcacttctggcgaacagatccatcataacc
aagatccagacgctttccgatgatgtggaccagtgggttttgattctacagacatcaaac
catgaaaaaggtcagcccattcctctgagaagtatcctgaatgacaatgaaatgttcacc
acatatctgagggaaaacttgtccatgccatcgacggtagccgacagtctgattacctca
aatattcgcctgaatgagatgatgggcatttcaaggcaagacgatctgaggatcaccctt
tgcaatggaacaactcttgatagatacgtggaattcaccagcgcctttgacaaggaggcc
tttcagaaagtcagctgctccctcacagcacagcagttgagacaaaccagagaagttttc
ctacaaaacctggatacaaggaagatgctcaccaatataaagaagttgcagaactcaatg
ttgttaaaggccgctgatatgctggatttcagagcagacgcatttggcagtctgaacatc
ctactttgtggtaaattaccaaactccagctccacaaagaccaccatgaatttccctgct
tttggagtgatgaggaatgacacagaaaacaacgccaattccagtgccttctgcaaagta
ctgattgacactcttgagggaactcctggcctacgtattgtttggaggacatttcggccc
ctaatccaagggaagatcctctacacccctgacacacctgcaactagactaatggtgaaa
gaggcaaatagtactttcaacgcattggccatgttgaaagagttgttggaagcttgggag
gattttgaaccacgtggttggaactactttcaaaatggcccccaagtcagtgcactgcgg
gcctttctggataacccggtgtttgcagccgcactcaaccacgggctcaaaggcacaaga
tggaccgaagaactgctcgccaacttcctgtacaacagcccccccgaggaccgccccgcg
ggcatgccgccgaatgactggcgcgacgtgttcaacgccaccagccaaatcctggacctc
ctgaagaagttcattgggtgcctggacctggataagtttgaggctgttgacagtgaggga
catctcttggctagagccttggagcttctagaaaacgatacgtactgggctggtatagtt
ttcgaagacctcgaccctgccgccagccacccccctccttacgtcaagtacaagatccgc
ttggacatcgatgagggggagagtaccaataagattaaagaaaggggatggtctcccggg
gcccgtgactccttcaacaacctgcgctatatatggggaggcttcgcctatctgcaggac
atgatggaccacggcattatacgggtgcacacgaacaaatcacagccgctcggcgtgttt
gcccagcaaatgccgtatccctgctacgtggacgacgtcttcctcgcgagtatcggaacc
atgcttcccatgtacctggtgctggccttcatgtacaccgtctgcatgaccatcaagggc
ctcgtcctggagaaggagcttaggctcaaggaggttcagcgggccgttggagttcagaac
ggtgccatttggttcgcgtggttcaccgagaactttgtcctgctcatggtcccatgcgca
ttcataagtgtcatggttaagtatgggaaggtgctgcagtacagcgacccctcagtgatc
ttcgtcttcctgctggtcttctgcgtggccaccatcatggagtgtttcttcatcagcgtc
ttcttctccaaggccaacctggcggcggcgtgcggaggcctcatctacttcgtcctctac
ctgccgcacctcctctgctacgcctggagggacgtcatggggttccaggtcaaaatcgct
gtgagtttgctgtcgtgcgtggccttcgggtatggctgtgagaactttgccaagtacgag
gagcagggcatcggtattcagtggagtaacatcgcccaaaatcctgaagacggagaccgg
tatagcttcatcgtgtccatcatcatgatgctagtcgacgccctcatctactggctgctc
acgtggtacatggagaacgtcttcccaggccaatatggaatagcaaagccgtggtacttc
ccattcaccgcctcctattggtgtgggacttcaccggcgcccaatgctgaccccagtcag
ttcaaggaccccattgaatacaccggtatagtaggcaattatttggaaaagccaccactc
aatatgaaggcaggggtctcaatcaggaaccttgtaaagatctataaaactgggaaaaag
cttgcagtggatggactaactgtggacttcttcgagaatcacatcacctctttccttggt
cacaatggggcaggaaaaacaaccaccatgtcgatcctgacaggactcttcgctccgacg
tcggggaccgctctaataaacggctatgatatccgcacagacatggacaccattagaaag
catctgggaatgtgccctcagcacaatgtcttattcaatgaccttacagtggaggaacac
atctacttctactccagattaaagggacgaagccgagatgaagtgaaaacagagattgac
caaatgatcaaggatgtcgggctgccacacaaacgcaaggaatttgccaagaacctgtca
gggggaatgcagaggaaattgtcggtggcaatcgcattcgtgggagggtccaacatcgtc
atcctggatgaacccacagcgggggtggacccatacgcccggagggggatatgggaacta
ctgttgaagtacaaacaaggtcgcacaatcatcctctccactcatcacatggatgaggcg
gacatcttgggagaccgcattgccattatctctcacggcaagatgtgttgctatggctcc
tccctgttcttgaagaaatactttggcagtggctactacctcactctggtcaaggccgga
gacgggcaaatgactggagtcgagcagcgccaggtgaaagaggagactggtgagtcattg
aggagaaccagtctggttgaagggatcgcaagacagaactggagtaactctgaacccaca
gatgtcagtaaggtggtgtgtcggcatgttcccgaggcggtgttcctcgagagcatcggc
caggagatcacctacatccttccctacggcggggccaaggatggcacctttgccctcctc
ttcgaagagctggacctcaaaatggccgacattggtgtcaccaactacggcatctcagat
accacactagaggagattttcctcaaagtggcagaggacacaggtgttgatgcggaaata
ccagctgaagacaagaggaaagtgacgttcactagcagagtggaggatgtggagagagtg
gccaatgtgaatgggaagggctccagtgtgatcacgggatgggaactgatccggagacag
ttcctggccctcttcatcaaacgctttcaccacgcacgcaggagccgcaaaggcctcatt
gctcaggtgattctgcctgctgtcttcgtctgcctgtctctcatcttctccgtcatcgtc
cccccttttgcggagtaccccaacctggagttgcaaccttggatgtatggactgccccaa
acgacattctacagcaatgatggaccgccaaataacacggaggttgctcgggtggcggac
tctttggtgaataatcctgggtttgggactcgctgcatggccaacaacccgataccaaat
ctcccatgtgtcccgaatgattctaagtggttcactcccacagtggatccctctatcagc
aacatcttcatcaacggaaactggagcatggccaacccttcccctaactgccagtgcagc
actcctcaaaagaccaccatgttgccagattgcccacctggagccggtgggctgcctcct
cctcagcggacccagaataccacagacacactgcaggacatgacgggccggaacatgaca
gacttccttttaaagacctacaaggaagcaggcagaaaaaggtatggagggatctctgtc
ggaggggtcaactcccaagtcaggatgactgaaccggaaatagaagctgtgatcagggat
ttgaggagcctattaaattcctcccaggataacacgaccaatcagatgctcctgaatacc
gagacgctcctgaaagagctcgggaccagggataatgtcaaggtgtggttctacaaccag
gcgtggcacggtattgtatcgttcctcaatgtggccaacaacgccatcctgagaggcaac
ctgccgccgggtcatgaccccagggagtatggaatctccgcctctagccaccccctcaac
ctcaccaaggctcagctttcctaccaggcaatggccgccacctccaccgatgtggtggtg
tccatctgtgtcatctttgccatgtccttcatcccagcaagcttcgtcctcttcctcatc
caggagcgtgtcagcaaggccaagcacttgcagtttgtcagtggcgtcaacccgaccgtc
tactgggtcgccaacttcgcctgggatatttgtaactacatagtcccttgtctaatagtc
atcgtcatcttcctgtgcttccaacaaaaagcctacgtgtccctttctaacctaccagct
ttgattctgctgctgatgatgtatgggtggtctatcacacccatgatgtacccagcctcg
tttatcttcaacgttcccagcacggcctacgtggtgctgacctgcatcaacctcttcatc
ggcatcaatgggagcgtggccaccttcgtcatggagttgttcgctgatgataacatctcg
aaaatcaatggtattgtgaagcaggtgctgctgatttttccgcacttctgtctgggtcga
gggctcatcgacatgggcaagaaccaggctatggccaccttgtatgaaagcttaggggaa
gaccgttaccaggaccccctcagctgggacatggtggggaagaacctgtgtgccatggcc
atccagggggcagtcatgttcaccatcactctccttatccagtataagttctgctacaaa
cccagactgatttctggagagtcattctccaaggaggacgaagatgtggacgtggcacgg
gagcgtgcacgcatccataaaggtggctcagagaaagacctgttgagaatctgcgatctt
tctaaggtgtactcggggaagaagattcctgctgtggacagggtgtgtgtgggcgttcca
gccgcagagtgctttggacttctggggattaacggggcaggaaaaaccaccaccttcaag
atgctgacgggggacatctccatctccgggggggaggccttcctaaacggatacagcata
cggacagagatgagggacgttcaccagaacatgggctactgcccgcagtttgacgccctc
aatgaccttctcaccggacgagagcacctggagttctacgccagactacgaggcgtaccg
gaggaagaagtccccatggtggcagagtggggcatccagaagctaggcctggtcaaatac
tcaaacaagtcagccggtacctacagtggagggaacaaacgcaagctctccaccgccatg
gctttgattggctgtcctcctgtggtcttcctggatgagccaacgacagggatggacccc
aaagccagacgcttcctgtgggactgcatcctgagtgtcatcaaagagggacgctcagtc
atcctaacatcacacagcatggaggagtgtgaggccctgtgcacgcgcatggccatcatg
gtgaatggacagttcaagtgtctgggcagcatccagcatcttaagagcaggttcggggac
ggctacactgtgatcgtgagggtgggcggctcgccccccgctctgggccccgtggaggag
tttgtctacgagaccttccccggtagcgtactgaaggagaagcaccacaacacgctgcag
taccaggtcccccacagcgagggcgctctggccagcatcttcagccatttcaccactcat
cagcagaggctgggtgtagaggactactctgtctcccagaccactctggatcaggtcttt
gtcaactttgcgaggtaccaacaggaggaggacaatcaggccctgcaagcttatgacaac
aaagtggacgtgtccgacgaaatgccaatggaaactcggacctcaaccgactcaactgta
ccagagagcgtctga
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integrated database retrieval system
