Salvelinus namaycush (lake trout): 120030297
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Entry
120030297 CDS
T07522
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120030297 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
120030297 (acin1b)
03015 mRNA surveillance pathway
120030297 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120030297 (acin1b)
03041 Spliceosome [BR:
snh03041
]
120030297 (acin1b)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120030297 (acin1b)
Spliceosome [BR:
snh03041
]
Complex C
Other components
EJC/TREX
120030297 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
120030297
NCBI-ProteinID:
XP_038831562
UniProt:
A0A8U0PWC5
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Position
36:16567936..>16598026
Genome browser
AA seq
1396 aa
AA seq
DB search
MADEDVTLDGKSLQSLRVADLKAALEHRHLPKSGAKNALIKRLKGALMLENVKKTSTSHI
GLQPNSQIGEEMSQNSFIKQYLAQQQELLRHRLEREAREAAEADAGETGPEEEEEDDDDT
EQDNDSASYHPDKHRPIPSQPPLTRAEEEEGGGGGPMMMGQGMMSRRPHFGPGSVPQESP
DAPGSWMQQRLSLHTGLRHEEPTTPSPPRAVASLSVRVLGDPERQGLPPSMPPRVQAQEN
EGTAPADDDRPAHYVLHLSRSARAAASAGGNRVQEDSDDDSSEEDEDEWGPAAGARRGVG
GGGRGGRSPPPRPQQPSPSVPVGRERSRRKLQPPQHIPPQQVVHQPPMQLRQPTPPPSPP
PELSFPLPDTPKQSPPDMDEEPEGAGAGVAVHSPPGGLQRQDSDSSSRSSSPEPLAQRRP
GPLSLLARKMASEGAFGKRGEGASDGQTGGGESSRPGDGSSSVPEAGPGVGVVLFRGAAI
THIGGSSAAHSGTVPVPEVPAPVPMFGSGAQFHPLSLVSGAAVPSITLTAEPQGPSGETA
QKRTEKEKKQVEEREMKQVEKQEESESCLPPWKHGRDVTSVSSQFGSGGSEVPAVHQGDS
PKKSPFGRDEPLSSPPGSTACLPALAPKKPRMFSNTSSGSMASPPKLEQQGSVVVTTPGE
PPLKQEVLVSGAQQYTDNTIEVTSPNKASAEKLGWKTGGDIVKTEKESDSQADKATPKAA
SETRRRGPEEAVEVEPMGPVLPPSYPGKGEEEKKRKEDVRKKEEERCRQRKRASDRRSSP
SSGADSSSSDSDSGSSSSRSSGSTSSRDKKKKSVPGKGRGDERRRLGKGGEKKQPSREKK
QSSLSEPSGPGPMEVERPDPEGSRAPQPTPEGDPENSEGRMEESTTPKALATRNISLTSS
KTSPEGAGEAESGTAAGRKRRWGSSTAVTTKKPSISITTDSLKSLIPDIKPSQEAVMDLH
PDDSQLSGDEDTSTTREDQGLDKDLKIRRTVTQVVPGESHENGQGEREEEEEENKQERER
THKEKRKNSYSEVTVASQSSTTHDANAKKVTPSDTLVRRSISQQKSGVSVTIDDPVRTDK
LPSPPRGKVSNIVHVCNLVRPFTLGQLKELLNRTGSVVEEGFWIDKIKSHCYVTYSSTEE
AVATRAALHGVKWPQSNPKVLSVDFCEQNELDFHRGLLTVDPREEHRPQPAVGPGGPKVR
PGGLPPLMTERDGRSDRGAVGGVRNQWAEREREMERRERTRAEREWDRDKVRDFGGKPGE
ERERGRRSRSLDRERRRKEREGKEKKTDKKDEPPVKLLDDLFNKTKAAPCIYWLPLTEEQ
ANQRGKEREERQKERERRRKEQQEEEDKKREEERKERMKSREEGGAAVSTGGGSVRGSEG
DRDREGERGRDREGER
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagatgttacgctggatggtaaatcgctacaatcgctccgtgtggcggat
ttgaaagccgctttggagcatcgacacctccctaaaagcggggcgaaaaatgcgctcatt
aagcgactgaaaggggctctgatgttggaaaatgttaagaagacttccacttcccacatt
gggctccagcccaactcccagattggggaggagatgagccagaacagcttcataaagcag
tacctggctcagcagcaggagctcctccgccacaggctggagagagaggcccgggaggcg
gcagaggccgatgcaggggaaacaggcccggaggaggaggaggaggacgacgacgacaca
gagcaggacaacgacagtgcttcctaccaccctgacaagcatcgccccataccctcccag
cccccgctgacccgggccgaggaagaggaaggaggtggaggagggccaatgatgatgggg
caaggaatgatgtctcgcagaccacactttggcccaggctccgtgccccaggaatcccct
gacgcccctggatcctggatgcagcagcgtctctcactccacactggcctccgccacgag
gagcccaccaccccctcaccgccccgcgctgtggcctccctgtctgtgcgtgtcctgggg
gacccagagcgccagggcctgccaccctccatgcccccccgcgtccaggcccaggagaat
gaaggcaccgccccggcggatgacgaccgacccgcccactatgtgctccacctcagccgc
tccgctcgggcagcagccagcgccgggggtaaccgcgtccaggaagacagcgatgatgac
agcagtgaggaggacgaagatgagtggggacctgcggcgggggcaaggagaggggtcggt
ggcggaggaagaggaggacgttcccctcctcctcggccccagcagccttcccccagcgtc
ccagtgggccgagagaggtccagacgcaagctacagcctccgcaacacatcccacctcag
caggtagtacaccagccccccatgcagctccgccagcccaccccgcccccctctccaccc
ccagagctctcctttcccctccccgacacccccaagcagagcccgcccgacatggatgag
gagccagaaggagcaggagctggggtagccgtccactcccctccaggtggcctccagagg
caggactccgactccagctcccgctccagcagcccagagcccctggcccagcggcggcct
ggacccctctccctgctcgcccgcaagatggcttccgagggagcgttcgggaagagaggt
gagggtgcctcagacggccagacaggtggtggggagtcgtccagaccaggagatggcagt
agcagcgtcccagaagcaggaccgggggttggggtagtcctgttccgtggggctgctatc
acccacatcggcggcagcagtgcagcgcactccggaactgtccctgtacctgaggtccct
gcaccagtgcctatgtttggatcaggagcccagttccatcctctctctctggtgtctgga
gcagctgtccccagcatcaccctcaccgcggagccccagggtccatctggagagacggca
cagaagaggacggagaaagaaaagaagcaggtggaggagagggagatgaagcaagtggag
aaacaggaagagagtgagagttgcctgccgccatggaagcacggacgtgacgtgacgtct
gtgtcctcgcagtttgggtctggggggtcagaggtgcctgcggtgcaccagggggacagc
ccgaagaagtcacccttcggcagggacgaacccctctcgtcccctcccggctcaaccgcc
tgcctgcctgctctcgcccccaagaagccccgcatgttctccaacacctcatccggctcc
atggcatcccctcccaaacttgaacagcaggggtctgtggtggtgaccaccccaggggaa
ccccccctcaaacaggaagtcctcgtctcaggggcccagcagtacacagacaacaccata
gaggtcacctcaccgaacaaggcgtccgcggaaaagcttggatggaaaactggaggagac
attgtaaagacggagaaggagagtgacagccaggcagacaaggcgacaccgaaagccgcc
agcgagaccaggagaagaggacctgaagaggctgttgaggttgagcccatggggcctgtt
ctgcccccctcttacccaggtaagggagaagaagagaagaagcggaaggaagacgtgaga
aagaaagaagaagagcggtgcaggcagaggaagagggcgagcgacaggaggtcatccccc
tccagcggcgccgactcttcatcctccgactcggattctggatcctcttcatcacgttcc
tctggctccacctcctcccgggacaaaaaaaagaaatctgtcccgggaaaaggaagaggg
gatgaaaggagaagactgggaaaaggaggagagaagaaacaaccttccagggagaagaag
cagtcatccctgtcggagccgtccggccctggccctatggaggtggagaggccagaccca
gagggctccagggccccccagcccacccccgaaggggacccagagaacagtgagggccgc
atggaggagagtaccactcctaaagctttggccacacgcaacatctctttaaccagcagt
aagacgtctccagagggagcaggagaggcagagtctgggaccgccgcggggaggaagagg
aggtggggatccagcacggccgtcaccaccaagaaaccttccatcagcatcaccacagac
tctctgaagtctctgatcccagacatcaagcccagtcaggaggctgtgatggatctccac
ccagacgacagccagctgtctggggacgaggacacctccaccaccagggaggaccagggc
ctggacaaagaccttaagatcagacgcaccgtcacacaggtggtcccaggtgaaagccat
gagaatggccagggagaacgagaggaggaagaggaggagaataaacaggagcgtgagagg
acacacaaagagaagagaaagaacagctactcagaagtaaccgtggcgtctcagtcctcc
acaacacacgacgccaacgccaagaaagtcactcccagtgatactctggtgcgtcgctcc
atcagtcagcagaagtctggtgtgtctgttaccatcgacgatccggtccgcacagacaaa
ctgccctctccgcccagaggcaaagtctccaacatcgtccacgtctgtaacctggtgcga
cctttcaccctgggccagctgaaggagctgctgaacaggacaggctctgtggtggaggag
ggcttctggatcgacaagatcaaatctcactgctacgtcacttactccagcacagaggag
gctgtggccacacgagctgctctgcacggggtgaagtggccccagagcaaccctaaggtc
ctcagtgtggacttctgtgagcagaacgagctggacttccacagaggtctgctgaccgtg
gaccccagagaggagcaccggccccagcctgccgtgggtcctggaggtcccaaagtccga
ccgggggggctgccccctctgatgactgaacgggacgggcgctcggaccgcggggctgtc
ggaggggtgcggaaccagtgggcggagagagagagggagatggaacgccgggagaggacc
agggcggaacgcgagtgggaccgggacaaggtgcgagacttcggaggcaaaccaggagag
gagagggagagagggaggagatctcgctccctggatagagagaggaggcgaaaggagagg
gaagggaaggagaagaagaccgacaaaaaggatgagcctcctgtcaaactactagacgac
ctcttcaataagaccaaagcagctccctgtatatactggcttcccctcactgaggaacag
gcaaaccagagagggaaggaacgggaagagcgacagaaagaacgagagaggaggcggaaa
gaacagcaggaggaggaggataagaagcgagaggaggagaggaaggagagaatgaaaagt
agagaggagggaggcgctgcggtcagcactggaggtgggagtgtccggggatctgaggga
gacagggacagagagggtgagcgagggagggacagagagggggagcga
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