Salvelinus namaycush (lake trout): 120030562
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Entry
120030562 CDS
T07522
Name
(RefSeq) BRCA1-A complex subunit RAP80-like isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120030562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snh03400
]
120030562
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
120030562
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
Motif
Other DBs
NCBI-GeneID:
120030562
NCBI-ProteinID:
XP_038831911
UniProt:
A0A8U0PTR8
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Position
Sna3:complement(34010284..34029136)
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AA seq
1160 aa
AA seq
DB search
MPPRKKRENRYTDDGPRKRRRAVDHEEDRVVISDSDEDEDFRPTSLEEHKREESKIRSNE
MTEEEMLDLAMRLSEQEASNTALRQRQEEETIRKAIAESLYADRPTHPHSESLLVDGSHT
QKCQRSPPEAESSIQPPRRKLSYPNHGVADREGAHGVGVSVGVANPETSRRGKKEGSPLL
DMPDLSQTQKVYSQSSPLSQASTSMPLSSQEGSSLKNPFGNLSAHVESQECKSTENDSQL
RKKSPVLPLATTVPSASKLILCLHKLSQDLLVDCQASGFLLCSQEGPPSLTLSTKSQMSQ
SFQPKSPTFSKSPVFSRTARTAGGEPGQGSPPMFSETDSGKEEKEASPTFPKSAMFSSSD
TGEEEKAASPTFPRSPVFPRTDQIRDQGPQDFIESVSTSEDHEDRDREDVKSSESSKCLP
PRLRTTLSLNKRLMPIRKTAGVADKVVDQEERQGESSQSAVNRISTPAKFAAEEDLNSEE
LTLALETQPMQELTSNMALRWSDDDEEEDGPAKSAQLPSPVFPQENDLPQPSNQCLSTNT
NHHCSPPHIHSPCLVPKKRTHISEDSACEDGESRSKRIRKKFTFKGMYGSPSPFLTRQAA
GRGSQDEAQARYPSSHQPQASSSHLSPPTGGQGDGGVVCYYWGVPFCPRGQDPDAYTQVI
MSQLEVYEKSLKEAQRGLLRKAGWGEPVLPGPPERPFSRRGRPKRHRAPELLEEEEEELQ
GVRNQQEEVVEVVEDDGEEREWRQSQGGTKEGGRRGRLEWKDYQSLFVSTPEQDEKSPSP
VFHVESNQQQILPRRSLGLRKEERRPLPLPDPLEKEKEEDENEGEKREEEERMGEEVVDV
GGLEVPGIRNDETQLGDDGTQDLMVTSPAQPQPERQSLPQIQTFLSSPHPLEQRVEGMEV
EEERRSGPVRSPARGEDVRVEMEETGEVQGGVSEPAPPQSPSMDCPMCMRPFPLTEIELH
AAYCDGSTANMEEEEMMAQSQSQVTVKSHRKRTRRGEKIGEEQPCSSGSGKAVQGEKCFL
CQQLFHLRDYEKHVEDCIRNQDVSKAISRAGQSGDLLSALDQTEHRDSGTAEAGPCDTAF
RSQHSGLIEALGESGGSGDIAVPGFRVSTSPIRSFTSISEATDCLIDFKRQYSSCTSSSS
SSRPRQRGRKFNRKFKFTKK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcggaaaaagcgagagaacagatacactgatgatggtcccaggaaacgacga
cgagcagttgatcatgaagaggacagagtcgtcatctcagacagcgacgaggatgaagat
ttcagaccaacatcattggaggagcacaaacgggaggagagtaaaataagatctaacgag
atgactgaggaagagatgctggacctggccatgaggctgagtgagcaggaggccagcaac
actgctctcaggcaacgacaggaggaggagaccataaggaaggccatcgctgaaagcctc
tacgcggacagacccactcatccccactcagaatctctgctggtggacgggagccatacc
cagaaatgtcaacgttcccctccagaggcagagagcagcatacagccccccaggcggaag
ctctcttaccccaaccatggtgtggctgacagggagggagcccacggtgtaggtgttagt
gtaggggttgctaatccagaaaccagcaggagggggaaaaaagagggtagtccattacta
gatatgcctgacctgtctcagacccagaaggtctactcccagtcttctcccctcagccaa
gcttccacctccatgcctctctcttcacaggaggggtcttctctaaagaaccctttcgga
aacctctcagcccacgtcgaatctcaggaatgcaagtccacagagaatgactcccaactc
aggaagaagtcccctgtattacctctcgctactacagtcccctcagccagcaaactcatc
ctgtgcctgcataagctcagccaggacctcctagtagactgtcaggcctctgggttccta
ctatgttctcaagagggtcctccaagcttaactctttccacaaagtcccagatgtctcag
tcttttcagccaaagagccctacattctccaaaagccctgtgttctccaggacagcgaga
actgcaggcggggaaccaggccaagggagtccccctatgttctctgagactgattcagga
aaggaagaaaaagaggcaagtccaacttttcctaaaagcgccatgttctccagtagtgat
acaggagaagaagagaaagcggcaagtcccacctttcccagaagcccagtcttccccaga
actgatcagataagggaccagggtccacaggactttattgaaagtgtatctacatcagaa
gaccatgaggatagagacagagaggatgtgaagagcagcgaatcctcaaagtgccttcca
ccacgcctcagaacaaccctgtccctgaacaagagactcatgcctataaggaagacagct
ggagttgcagacaaagttgttgaccaagaggaacgtcagggtgaatcctcgcagagcgct
gtaaacaggattagtacgcctgcaaagtttgctgcagaagaagaccttaattcagaggaa
cttacattggctttggagactcagccaatgcaggagttaaccagtaatatggcgctacgc
tggtcagatgatgacgaagaggaagacggtcctgcaaagtcggctcagttgcccagccca
gtcttcccacaagagaatgacctcccacaaccaagcaaccagtgtctctccacaaacacc
aaccaccactgttcccctccacacatacacagcccctgcctcgtccccaagaaacgcact
cacatctccgaagactccgcgtgcgaggacggagagagccggtccaagcgcatccggaag
aagttcaccttcaagggcatgtatggatctccctccccctttctcaccagacaggctgca
ggtagagggagccaggatgaggcacaagccagatacccctcttcccaccagccccaggcc
tcttccagccacctctctccccccacaggcggccagggggatgggggagtggtgtgctac
tattggggcgtgcctttctgtccgcgagggcaggacccagatgcctacacgcaggtgatc
atgtcccagctggaggtgtatgagaagagcctgaaggaagcccagaggggtctactgagg
aaggcaggctggggggagcctgtccttcctgggcccccagagagacctttttccaggagg
ggacgccccaagagacacagggccccagaacttctggaggaagaggaggaagaattgcag
ggagtgaggaaccaacaggaagaggtagtggaggtggtagaggatgatggtgaggaaagg
gagtggcggcagtcacagggagggacgaaagagggagggaggagaggaagactggagtgg
aaggactatcagtcactgtttgtgtccactcctgaacaagacgaaaaatcgccctcacct
gtatttcatgtagaatccaatcaacaacaaattctacctcgaaggagtcttggccttaga
aaggaagagagaagaccactgccactgcctgacccgctggagaaggaaaaggaagaagat
gaaaatgagggagagaagagggaggaggaagaaaggatgggggaggaagtggtggatgtc
ggtggcttagaagttccaggtataagaaatgatgagacccaactcggtgacgatggcacc
caagacctgatggtcaccagccctgcacagccccaaccagagaggcagtccctgcctcag
atccagacttttctctcatcaccccatcctctggagcagcgtgtagaggggatggaggtg
gaagaggagaggaggagtggccctgttaggagtcctgctagaggagaggatgtgagggtg
gaaatggaggagacgggggaggtacagggtggggtctcagaacctgcaccccctcagagc
cccagcatggactgtcctatgtgcatgcgccccttccccctgacggagattgagctgcac
gctgcctactgtgacggtagtaccgctaacatggaggaagaggagatgatggctcagagc
caatcgcaagttacagtgaagtctcataggaagaggaccagaaggggagagaaaattgga
gaggagcagccctgttcttctggctctggcaaggcagtgcagggagagaagtgcttcctg
tgtcagcagctgtttcatctacgggactatgagaagcacgtagaggactgcatcagaaac
caagatgtgtccaaggctatatccagggctggacagagtggagacttgctgagtgctttg
gaccagacagagcacagagattcagggactgctgaggccggaccatgtgatactgccttc
aggagccaacacagtggccttattgaggctctgggagagtctgggggaagtggagacatc
gccgtcccaggtttcagagtgagcacctcgcccatccgatccttcacctccatctcagaa
gccacagactgccttattgacttcaagcgccagtactcttcctgtacttcctcctcttcc
tcctccaggcccagacaaagagggaggaaattcaataggaaattcaaatttactaaaaaa
tag
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