Salvelinus namaycush (lake trout): 120030677
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Entry
120030677 CDS
T07522
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120030677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120030677
03009 Ribosome biogenesis [BR:
snh03009
]
120030677
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120030677
Spliceosome [BR:
snh03041
]
Complex A
U2 snRNP components
U2 related factors
120030677
Complex B
120030677
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
120030677
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
90S particles
Helicases
120030677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SRP54
AAA_25
nSTAND3
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
120030677
NCBI-ProteinID:
XP_038832048
UniProt:
A0A8U0PVG7
LinkDB
All DBs
Position
Sna36:10175989..10207771
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AA seq
703 aa
AA seq
DB search
MALNPAVGSAGLSHKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILGR
HQSFVLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVM
LGQEVGYSIRFEDCSSAKTFLKYMTDGMLLREAMNDPLLERYGVVILDEAHERTLATDIL
MGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYL
EAAIRTVIQIHMCEEEEGDCLLFLTGQEEIDEACKRIKRDIDDLGHDAGDIKIIPLYSTL
PPQQQQRIFEPPPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIR
VESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVL
QLKKLGIDDLVHFDFMDPPAPETLMRALELLNYVAALNDDGDLTELGSMMAEFPLDPQLA
KMVIASCEFNCSNEILSITAMLSVPQCFVRPTEARKAADESKMRFAHIDGDHLTLLNVYH
AFKQNHESTQWCYDNFVNYRSLMSADNVRQQLSRIMDRFSLPRRSTEFTSRDYYINIRRA
LVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVMYNEFVLTTKNYIRTCTD
IKPEWLVKIAPQYYEMGNFPNCEAKRQLERIVAKNSTKEYSPY
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggccctgaacccggctgttggcagcgcaggcctctcccacaagcagacggccatgcag
cagcagatcaacccgttcaccaacctgccccacacgccgcgttactacgagatcctgaag
aagaggctgcagctgccagtgtgggagtacaaggagcgcttcaacgacatcctgggacgc
caccagagcttcgtgctcgtcggagagacgggctccggcaagaccacgcagatcccgcag
tggtgtgtggacatggtgaaggggttgggcggacctaagaaggcagtggcctgtacccag
cccaggagggtggcagccatgagcgtggcccagagggtggccgacgagatggacgtaatg
ctgggccaggaggtcggttactccattcgatttgaggactgcagctcggccaagaccttc
ctcaagtacatgacagacggtatgttgctgcgggaggccatgaacgaccctctactggag
cgctacggcgtcgtcatcctggacgaggcccacgagagaacgcttgccacagacatcctc
atgggtgtcctcaaagaggtggtccgacagaggtcagacctcaaggtcatcgtcatgagc
gccacgctggatgccggcaagttccaggtgtactttgacagctgtccactgctgaccatc
ccgggacgcacgcacccggtagagatcttctacacgccggagcccgagagggactacctg
gaggcagccatccgcaccgttatccagatccacatgtgtgaagaggaggagggcgactgt
ctgctcttcctcactggacaagaggaaatcgacgaggcctgcaagcgcatcaagagggac
atcgacgacctgggacacgacgcgggggacatcaaaatcatcccgttgtactcgacgctg
ccgccccagcagcaacaaaggatctttgagccgccaccaccccgcaagcccagcggagcc
atcgggaggaaggtcgtggtttcaacaaacatcgccgagacatccctgaccatcgacggc
gtggtgtttgtaattgatcccggatttgccaagcaaaaggtatataaccctcgtatcaga
gtggagtccctcctggtgacggccatcagcaaagcctcggcccagcagagggcggggcgc
gccgggaggacacgcccagggaagtgcttccgcctctacacagagaaggcctacaagacc
gagatgcaggacaacacgtatccagagattttgaggtccaacctgggttcggtcgtgctg
cagctcaagaagctaggtatcgacgacttggtacatttcgacttcatggacccaccagca
ccggaaaccctgatgcgggccctggagctgctcaactacgtggcggcgctcaacgatgac
ggcgacttgacggagctcggctccatgatggccgagttccccctagacccgcagctagcc
aagatggtgattgcctcctgcgagttcaactgctccaatgagatcctgtccatcacagcc
atgctgtcagtcccacagtgcttcgtacgacccacggaggctaggaaggcggccgacgag
tccaagatgcgtttcgcccatattgacggagaccacctgaccctcctcaatgtctaccac
gccttcaaacagaaccatgagtcgacacagtggtgctacgacaactttgtgaactacagg
tcgctgatgtcggccgacaacgtgcgccagcagctgtcccggatcatggaccgcttcagc
ctgccccgccgcagcacagagttcaccagcagagactactacatcaacattcgcagagcg
ctggtcacaggattcttcatgcaggtagcccatttggagcgtacaggccactacctgact
gtgaaggacaaccaggtggtccagctgcacccctccactgtgctggaccacaagccggag
tgggtgatgtacaatgagtttgtgctgaccaccaagaactacatccgcacctgcaccgac
atcaaaccagagtggctggtgaaaatcgccccgcagtactatgagatgggtaacttcccc
aactgtgaagccaagagacagttggagcgcatcgttgctaaaaactcaaccaaggaatac
tctccgtactaa
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