Salvelinus namaycush (lake trout): 120030812
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Entry
120030812 CDS
T07522
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120030812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120030812
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120030812
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120030812
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120030812
NCBI-ProteinID:
XP_038832188
UniProt:
A0A8U0TXL7
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Position
Sna37:complement(26980887..26992416)
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AA seq
958 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIRESPMD
SQELDDESWDDHDDDAHAISSAALVATSPTGMGNIEDEMFLHSSSTPTSTTSSSPIPPSP
ATCTAENSEDDKKRGRSTDSDVSQSPAKNGTSSLLSFSSSANSGSSSSSSLVSMAAVVGG
NPGVPTSNSLIGSFSSAVQQHQPQPPQQPVLQPLLQPQQPQTKPCTPSPPSHPLLSTAPS
LPTPTTPISASPNSLPQVSSGHILNSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSASL
NTMAGLLSGSNHAPYAQAAALGGLGLSTTTQSSVSVESSSIPTSCSSGVTTNGAGTGLGL
LGSSPAHGSLTGGILGLVPGQSVILGPPLIPLSPVGAAPGGAVGMMGGNGGSMGPIGGVV
GSNAAPARPPSGLKQNGSTSYSAVVAESTAESAFSTPSQSQSSQPSSLTSSASQSMDNGP
SLISSITLPPSSPSPSFSDSIPGGGSLLNGPHSYTQASEGLKLPTDLRQILMETRMSAQA
PEPPGAMATATNTRKRKQCQAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSGSL
AAPGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSERIR
QYLMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQS
WRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtcgctgaa
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccaa
aaggaaaaatatgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
cagataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggagaat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagacg
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggaa
aaagaagagacgggaaactggctaacgaatacgatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccgtgagtcgcccatggac
agccaggagctcgatgacgagtcctgggatgatcatgatgatgatgctcatgctatcagc
tctgcagcgctggtggccacctctccgacgggcatggggaacatagaggatgagatgttc
ctccactcgagcagcactcccacctccaccacctcctcttcccccatccctccatccccg
gccacctgcactgctgagaactctgaggacgataagaagagagggcggtcgacagacagt
gacgttagtcagtctcctgcgaagaacggcacttcctccttgttgtccttttcctcgtcc
gccaattccgggtcctcttcttcctcctctcttgtatccatggccgccgttgtcggaggc
aaccctggggttcccacaagcaacagtctaataggaagcttcagcagcgccgtgcaacaa
catcagcctcaacctccacagcaaccagtcctgcagccactgctacaaccacaacaaccc
caaacaaaaccttgcacccccagcccacccagccaccccctcctctccaccgccccctct
ctccccacacccactacacccatctcagcctccccaaactccctgccccaggtctcgtct
ggtcatatcctcaactccagcctaggccttgggttgggcctgggtaaagttggcatgacg
gggacaagcagtgccaactcaatgtctggtctgggcctgactgggatgtctgcctctctg
aacaccatggcaggcctgctctctgggtccaaccatgccccttacgcccaggcagctgca
ttgggaggcctgggtctgagtaccaccacccagtccagtgtctcagtggagagctcctcc
atccccacctcttgctccagtggagtgaccaccaacggggctgggacaggcctgggcctg
ctgggttccagcccagcacacggctccctgactggggggatcctgggcctggtgcctggg
cagagtgtgatccttgggccccctctgatccctctcagcccggtcggtgctgcccctggg
ggggcagtggggatgatgggaggaaacggaggaagcatggggccaatcggaggagtagtt
gggtcgaacgcagcccctgccagaccgcccagtggactgaagcagaacggaagcacaagt
tacagtgctgtggtggcagagagcacagcagagtccgccttcagcacacccagccaatca
cagagcagccagccttcctcgctgacctcctcagccagtcagtctatggacaacggtccc
agcctcatcagctccatcaccttgccccccagctctccgtccccctcgttttcggacagt
atccctggtggtgggagtctcctcaacggaccccactcctacacacaggcctctgagggc
ctcaagcttcctacagacctccgtcagatactgatggagaccagaatgtcagcgcaggcc
ccagagccaccaggggccatggctacagccactaacacacgaaagagaaagcagtgtcag
gccccggagcctctgagttctctgaaggcgatggctgagagagcagcattaggatcaggt
ctggatggagagatccccaacctgcacctcacagacagagacatcttctctggttcgttg
gctgcccccggcacgcccgcggccccccagccctccctgtcggaggtgagcatcccccct
tccctgggggtgtgtcccctgggtcccactccgctctccaaggaccaggtgtaccagcag
accatgcaggagtctgcttggacacacatgccgcacccctcagactccgagaggatcagg
caatacctgatgaggaacccatgccccaccctgccattccatcatcagatgcccccccac
cactcagactctatagagttctaccagagactgtccacagagactctcttcttcatcttc
tactacctggagggcactaaagctcagtacctgtcagccaaggctctgaagaagcagtcg
tggaggttccacaccaagtacatgatgtggttccagaggcacgaagaacccaagactatc
actgatgagtttgaacagggcacttacatctactttgactatgagaagtggggtcagagg
aagaaggaggggttcacctttgagtacaggtacctggaagaccgagacctgcagtga
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