Salvelinus namaycush (lake trout): 120031166
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Entry
120031166 CDS
T07522
Name
(RefSeq) protein SMG5-like
KO
K11125
protein SMG5
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120031166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120031166
03032 DNA replication proteins [BR:
snh03032
]
120031166
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
120031166
mRNA cycle factors
Common to processing body (P body) and stress granule
120031166
DNA replication proteins [BR:
snh03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
120031166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
120031166
NCBI-ProteinID:
XP_038832698
UniProt:
A0A8U0TY41
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Position
Sna37:11977632..11991878
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AA seq
1107 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFFQ
HLLLYIQSHYQLEMQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVTPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKQLLVSFMYLQSLLQPKNS
LLETELTSLCQSVLEDFNLVLFYLSSPPHGHEATSPSEEEHEEHDSPCTLLPDALVFKMV
ITCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESQVPPLQTDNTD
DSELRDPSDPLTSEERPLQNGSLDHEEDEGGHLSTVAQKAGVGERKAEEEKQRQKKKYAR
LSMMRRRRCATRKEDESDLSEGFESDEEEEEEQRGCADSGDGASGPSGPSLTPSTLGKES
KSGRENPTEGTWESASEEDEEGSTAFDVETDSDMNSQESRSDLEDIEDSETPENLDTQPE
DDDEEEQADPREDGDGDTPQATNGPLLPSDPSISSNLQAMSSQLFQAKRCFRLAPTFSNV
LLRPHSSATNSTPNPTDPDAASTTPSQETPPPPGDSPCDAGPGTANGTNDNEVDSDSECS
VHSNQSVHSEKTLSERLEILTNQGLIQVVKVFVDWLRTNTDIILMCAQSSQSLWNRLSVL
LNLLPDGSKMLEAELGLNTEVTELLSECEQPSLVQSLLLPEDLALRHLPALNLAHRHLDY
TRPRPSLSPVQECVVRVCCIRSFGHFLTNLQCNVLHFNPEAGIFTSISQSEQDNLVQQAK
AQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKTQSSMSPYLVPDSAALCQHLN
LLRHLAGSGCFIIIIPRTVIDGLDHLKKENAGARDGIRFLESEFRKGNRYIRCQKESGRS
FERDKLKRQDIEAWHLYKTVDSCRQLTVSQSNGDEDTAGMVTILTGHSVEELCTRSAPMK
SAIQAVATAGMELKNIVEFYRQWKEIG
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgagtggacctgggcaggatagcgagccagaggcaaaagtcctcctcatcaagcggcta
tacagggcagtggttgagtcggtacacaagctggatgtcatcattggcagcaagtcatcg
tacagggaggtcttcaagcctgaaaacatcagccttcgcaacaagttgagagagctgtgt
gtgaagctgatgtttctccaccctgtggactatggtcgcaaggctgaggagcttctgtgg
aggaaggtctactacgaggtcatccaggtcatcaagaccaacaagaagcacatccacagt
cgcagtgccctggaatgcgcctacaggactcacctgatagccggcgtgggcttcttccag
cacctgctgctctacatccagtcccactaccagctggaaatgcaggactgcatcgactgg
acccatgtcaccgaccccctcatcggtcggaagaagccggtatcagccacccctaaggag
atggagtgggcccaaatggcctgccatcgctgcctggtgtacctgggagatctagcccgt
taccagaacgaattggctggggtggaggctgagcagctggcagagcggttctaccaccag
gccctgtctgtcactccgcacgtaggaatgcctttcaatcagttaggtacactggcgggg
agtaaattctacaacgtggaggccacctattactacctacgctgtatacagtcggagact
cccttcgaaggggcctatgggaatttgaagcgtctgtttgataaagcagctaagatgtac
caccaggtgaagaaacaggagatgaagaagctgtctccctcacggcaaagatccaaggac
atcaagcaacttctagtgagcttcatgtatctgcagagtctactgcagcccaagaacagt
ctgctggagacagagttgacctctctgtgtcagtcggtgctggaggattttaacctggtg
ctgttctacctgtcctcgccgccacacggccacgaggccacttcccccagcgaggaggag
catgaggagcacgactcgccctgcaccctgctccccgacgccctcgtcttcaagatggtg
atcacctgcctcatggtggtgcacagcctgaagcggggagggtcaaagcagtacagtgcg
tcaatagccttcacgctggccctcttctcccacctggtgaaccatgtcaacatccgcctg
caggctgagctggaggagggggagagccaggtgcccccgctgcagaccgacaacacagac
gattctgagttgagagacccatctgacccattgacttcggaagagaggcccctgcagaac
ggctccctagaccatgaggaggacgaggggggccacctgagcaccgtggcccagaaagca
ggcgtcggtgagcggaaggcagaggaggagaaacagaggcaaaagaagaagtacgcccgc
ctctccatgatgcgccgccgccgctgcgccacccgcaaagaagacgagagcgacctgagc
gagggcttcgagagcgacgaagaggaggaagaagaacagaggggctgcgccgactccggg
gacggagcctcaggaccctcgggaccctcactcaccccctccacgctgggaaaggagagc
aagagcgggagggagaacccgacagaggggacctgggagagcgcctcggaggaagacgag
gaggggagcacagccttcgatgtggagactgactcggacatgaacagtcaggagtcccgc
tccgacctggaggatatagaggactcggaaaccccggagaacttggacacgcagcctgaa
gacgatgatgaggaggagcaagcagatcccagggaggatggagacggggacacccctcag
gccaccaacggccccctcctgcccagcgaccccagtatcagtagtaacctccaggccatg
tcatcccagctgttccaggccaagcgctgcttccgcctggcgcccaccttcagcaacgtg
ctgctgaggccccacagctccgccaccaactccacacccaatcccaccgacccagacgcc
gcctccaccaccccctcccaggagacccctcctcccccgggggactcaccctgcgacgct
ggcccgggcactgccaacggaaccaacgacaatgaggtggattccgattcggagtgtagc
gtgcacagcaaccaatcagtacatagcgagaagaccctgtcggagagactggagattctg
accaatcaggggctcatccaggtggtcaaggtgtttgtggattggctgagaaccaacact
gacattatcctcatgtgtgcacagagttctcagagcctatggaacagactgtctgtgcta
ctcaacctgctgcctgatgggagcaagatgctggaagcagagctgggtctgaacactgag
gtgacggagctgctgagtgagtgtgagcagcccagcctggtccagtccctgctgctgcct
gaggacctggccctgcgacacctacctgccctcaacctggcccaccgccacctcgactac
acccgccccagaccttccctcagccccgtacaggagtgtgtggtgcgcgtgtgctgcatc
cgcagctttggccacttcctcaccaatctccaatgcaacgtgctgcacttcaacccggag
gcgggcatcttcaccagcatcagccaatcagagcaggacaacctggtgcagcaggccaag
gcccagttccgcatggcagaggaggaggctcgacgaaaccgcctgatgagagacatggct
cagctccgcctacagttggaggtgtctcagctagagggcagcttgcagcagcccaagact
cagtcgtccatgtctccgtacctggtacccgactctgccgccctgtgtcagcacctcaac
ctcctcagacatctggctggcagtggctgcttcatcatcatcatcccccgcacagtgatt
gatggccttgaccacctgaagaaggagaatgccggagcgagggacggtatccgcttcctg
gagtctgagttccgtaaaggcaacaggtacatacgttgccagaaggagtcagggcggagt
tttgagagggacaaactgaaacgccaggacattgaagcctggcacctatacaagactgtg
gacagctgtcgtcagctgaccgtctcccagagcaacggagacgaagacacggctggcatg
gtcactattctcaccggtcactcagtggaggagctgtgtacccgctctgcgcccatgaag
tcggccatccaggcagtggcgacagcaggcatggagctgaagaacattgtggagttctac
cgtcagtggaaggagattggctga
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